I don't own Naruto or Pokemon
The Pokemon Ninja
The beginning
Ninja Era
It has been over two thousand years since the Great War between Ninjas. However it also proved to be disastrous with the population dropping by two thirds.
The warrior responsible for winning this war was a young Ninja of sixteen. He defeated the three instigators of the war but in the process the ninja's that fought in the fronts we're wiped out.
As were over thirty thousand civilians and more would have died if the leaders of the village including the young warrior used a powerful Kinjutsu to protect the world.
Out of the five Kages only Naruto Namikaze the sixth Hokage survived and has live due to his Uzumaki blood and the demon in his stomach for several millenniums.
Over the years he created the first Pokemon Arceus, Garatini, Dialga and Palkia
500 years later more creatures were created by the four originals with ninja like abilities and skills. People learned how to capture them and train them for friendly fights.
Present day
A blond haired man was walking down the road to a town "man it has been a long time since I have seen action," he thought his cloak with flames dancing in the wind.
He continues down the path to a small town "Pallet town," he thought as he entered.
He sees a brown haired woman with shopping bags about to spill out and goes to help her "excuse me do you need help ma'am?" asked the blond.
The woman turns around "if you can that would be great," she said.
Naruto grabs all five bags "lead on I will carry all these," he said.
The woman nods shocked by the ease he is carrying the bags.
The two walked to her house "can I ask your name?" asked the woman.
The man smiled "Name is Naruto Namikaze and you are?" he asked.
"Delia Ketchum," she said.
Naruto and Delia got to the house "relation to Brendan Ketchum the Master of Orro region?" asked Naruto.
Delia nodded "that was my husband when before we got divorced," she said.
A boy with black hair runs down the stairs "mom you're back from the store?" said the boy.
He sees Naruto "mom who is this?" he asked.
Naruto smiled "Yo I am Naruto Namikaze and who are you young man?" he asked.
"I am Ash and I am going to be a Pokemon master," he shouted.
Naruto chuckled "you remind me of myself when I was your age," he said.
Ash looked at him "I have some advice Ash; you will grow strong if you have someone precious to you to protect," said the blond.
Ash eyes shined with determination "do you have someone to protect Mr. Namikaze," he asked
Naruto eyes looked sad at the question "used to," he said.
Ash looked confused "what do you mean Mister?" he asked.
Naruto smiled "I will tell you when you're older," he said.
Delia comes up to the two "Ash that will be enough questions for now get ready for dinner," she said.
Naruto smiled "thank you Mrs. Ketchum," he said.
"Would you like to stay for dinner?" she asked.
Naruto was ready to decline when his stomach growled "guess I am a little hungry I would love to," said Naruto
Dinner was uneventful for the most part and Naruto got up "thank Mrs. Ketchum dinner was very good," he said.
"Call me Delia; Mrs. Ketchum makes me feel old," she said.
Naruto smiled "Thank you for dinner Delia," he said.
I have to head out if you don't mind," said Naruto.
"Will you be okay with wild Pokemon?" she asked.
Naruto smiled "thank you for your concern; but I am a big boy," he said jokingly.
"Very well stay safe," said Delia.
Naruto walked out into darkness of the night and headed down route one. He got to Viridian City and booked a hotel "I have a feeling that something is wrong," he thought.
A few days later Naruto was in the cafeteria when he overheard a conversation "did you hear Pallet was taken over by Team Rocket?"said one of the voices.
"Why did they attack?" asked one of the guys with worry in his voice.
"They were looking for something ancient," said another
"We have to do something Draco we are the Pokemon G-men," one of the guys.
"We can't without orders," said the second man.
Naruto got up and left the dining area and ran back to Pallet. With worry in his face he ran through trees and got to the town.
At the entrance was four rocket grunts. Naruto walk towards them as he grabbed a scroll from his pocket he saw Delia and her sons as well as the other residents tied up "what do you want here?" asked one of the grunts.
Naruto stands in front of them "let this town go now," said the blond. The three laugh "and who's going to make us?" asked one of them.
Naruto phases out and reappears behind them "guess I will," said Naruto.
The grunts jump back a grab their pokeballs "go Zubat," they shout.
As three purple bat Pokemon appear in light of red beam all flying around Naruto.
Naruto shakes his head "very well," he said as he takes a stance.
"Zubat supersonic," shouted one of the grunts.
Zubat unleashes a high screech noise as Naruto walks closer. The attack hit Naruto dead on. The grunt hope to see him writhing in pain from the sound are shocked to see him with his hand out.
Naruto smirks "pathetic," he said as everyone was amazed by him blocking an attack without any damage to himself.
Naruto disappears and reappears behind the Zubat's as they fall down knocked out. Naruto then knocks out the guards. He walks to the townspeople and unties them "get to your homes now," he said.
He walks to the mountain that has an opening "better see what this is about," he thought. He walks to the cave entrance he notices the symbol of two rocks one on top of the other "So this is the former Earth Country," he thought.
He enters and sees a man in a red business suit ordering the grunt around "dig faster," he said.
Naruto walks up to them "stop what you are doing now," said Naruto in a growl.
The man turns around "well if it isn't someone trying to play hero," said the Man
"My name is Giovanni leader of team rocket," he said.
Naruto glares "Naruto Namikaze former sage; stop now," he said
The man backs away "get him boys," he said. The ten grunts surround Naruto. Naruto goes through hand sign "Wind Style: Forceful Blast," he said as the wind picks up and slams the grunts into the wall knocking them out.
Naruto grabs the leader and shunshins outside and throws the man to the ground "you have ten seconds to leave," said Naruto as unleashes little killer intent making the Leader to flee in terror.
Naruto walks to the entrance and drips some of his blood on the ground and a new rock face came out of the earth and covered up the entrance.
Naruto walks away from the rock formation when he is approached by Delia "that was amazing Naruto," she said.
Naruto smiled a little "I haven't had to use them in a while," he said.
A man with a white lab coat walks up "that was impressive I am Professor Oak of Pallet," he said
"A pleasure Professor," said Naruto as he takes the older man's hand.
The professor shakes Naruto hand "I see you care for living thing; would like to be a pokemon trainer," he asked.
"I don't have a pokemon," said the ninja.
The professor smile "I got three that you can pick one," he said.
He and Naruto walk to his lab on a hill "the pokemon I have is Charmander, Squirtle, and Bulbasaur so pick one as you starter," said the professor.
I will take Bulbasaur the grass type," said Naruto as he grabs the pokeball.
Professor Oak gives him five Pokeballs and a pokedex "thank you professor," said Naruto as he bowed respectfully.
Naruto headed out of the lab and went to the Ketchum household and knocked. After waiting for about a minute the door opens to reveal Delia in a night gown "oh Naruto come on in," she said.
Naruto sat down on the couch with Delia sitting on the opposite side "so I heard from the professor you're going on a journey with your Bulbasaur," she said.
Naruto nodded "yup I was going to head out in an hour," said the ninja
Delia frowned "why don't you go in the morning I have spare room you can spend the night," she said.
"Ash is going to go on his Journey next year when he is ten," said Delia.
"I see that is wonderful," said Naruto.
After talking for a few more minutes Naruto goes to the guest room that Delia prepared and fell asleep.
Crappy ending for a chapter
A/N: I would like to thank Masane Amaha's King for letting me use some of his ideas. His story which I suggest you read is called Naruto new world which is a pokemon and Naruto crossover. It is well written and better than this one. Next chapter I might do a time skip of a year for the indigo league. But I am not sure.
Now for the pairing I am not sure.