A/N: Please enjoy this story, I will try to update and not make spelling mistakes but I have a bad keyboard and don't have Microsoft Word so, without further ado, enjoy!
"Sir, the brat and the police are closing in on us, and our members are deserting, we're losing control of Kanto at an astronomical rate!"
A man with cold eyes and a rugged scar down his face turned and took the news with a passive face. He could show no weakness in front of his son, his most trusted and loyal follower. But for the first time in his life, his mask cracked and emotion spewed from within. His son gazed with a shocked expression, for the man did not display fear nor a trace of grief. Instead, an intense rage was plastered into his features, with a maniacal glint in his eye. "It is over for us, but they will pay dearly for fighting our control. We cannot win this, but there is no way we will not leave our mark on Kanto. Go son, tell General Manu to execute operation 66, codenamed Firebird. Say the sequence Alpha, Alpha, Delta, Phi, Omega. Ensure that Hydra will have it's final moment of revenge."
"As you wish father, I shall see you on the other side," the young man responded, leaving his black hair to swish along with his cloak for the last time. As his footsteps receded, the older man summoned an Ultra ball with psychic power and released a dark dragon with three heads.
"Hydreigon, I sense them breaking the final lock to our bunker. Distract them outside. They must not find him until he calls the general. Fight to the end, and remember the sacrifice I made for you." Hydreigon nodded, before having random flashbacks of the man's sacrifice to protect his only friend: a green Deino. He surrendered his wife to them to protect me, now I shall repay the master. Images of a young woman with pink hair being taken away flooded the Pokemon's mind, and he knew that he would give his life for his master.
"General, you may proceed with operation 66 codename Firebird. Alpha Alpha Delta Phi Omega." said a low voice over the only remaining phone in the bunker.
"Very well," a gruff voice replied, "it shall be executed within 7 minutes. A short click indicated the call was over. The young man glanced at his watch, determining it to be 23:53. How ironic, he thought, the start of a new day marks the end of an era. With that final thought, he sat in a chair, waiting out the last minutes of his life.
"It is the end for you. Your green Hydreigon could never stand up to my full team of six. It is over for you and your entire team this time."
The leader of Team Hydra gazed upon the young boy of 17 situated in front of him. A tear formed in his eye for the slightest of seconds upon hearing his Hydreigon's fate, but was quickly pushed aside by insane laughter.
"You fool! Team Hydra will never surrender, we shall inflict pain on you this one last time. Your fate is tied to mine, we shall both die." With that, he gazed at his monitor and noticed the time had just passed to 23:59. He gazed at the trainer whose facade broke to display his confusion. Before he could be restrained by the boy's Pikachu, however, he projected a live feed of a seemingly plain mountain.
"You see, Red, you have been a pain in my side for too long. In one minute, you will see Team Hydra's last resort. You have lost. You may kill me and disband my grunts, but you have lost."
Red looked at the screen in horror, as the mountain peak opened and revealed numerous nuclear warheads attached to rockets. Numerous jets flew out of the peak as well, carrying heavy bombs and munitions. At exactly 00:00, the missiles launched and directed themselves towards their targets. Red sighed, realizing the man had truly won in the end. He hugged his Pikachu one last time. He did not notice the man press a red button, and the last thing he heard was a rumble as the bunker exploded in a massive fireball, obliterating Mt. Silver with just one blast.