Disclaimer

I do not own Naruto- However please understand that this is going to be my first "serious" story so if it not up to par, please know that I am trying my best. Although I may be new to fanfiction, I do hope that readers enjoy my story and any feedback, positive or negative that I can get I will gladly accept.

If you want to know were this story is heading, or what the pairing is, you can pm me and I might tell you, however understand that this may ruin the story, so I would refrain from doing so.

However, I am happy to say that although my pairing is not necessarily rare to find on fanfiction, neither is my premise, but nevertheless this is a rather large spinoff of cannon, so please try and understand that, I am changing facts around to suit my liking. One of the biggest things that I am changing is that in this story Uchiha Madara is Tobi. If this puts you off then I hope that you can open your mind and give my story a try, but if you just can't take my horrible writing, then I understand.

I just ask that you provide me with tips to help me improve.

Now if you don't like reading lemons, incest, bloodline Naruto or if you like to read yaoi then I am sorry but this story may not be to your liking.

Now on with the story

The Doujustu of the Uzumaki

The Rinnegan- an infamous eye often called a myth because of its supposed connection to the creator of ninjustu the Sage of Six Paths. However what most don't know is that its rarity is sparse because of the three specific conditions it takes to activate the legendary Rinnegan. However soon an immortal man is going to influence the genetic code of a young boy who is going to change the world just as his predecessor before him.

Village Hidden In the rain – 20 years before cannon starts

Hurry up Kagein we can't wait forever you know,

"Don't worry" replied Kagein as he put on his gear and added in some extra explosive tags just in case, "there I'm all ready". As the two friends headed out they never noticed a hooded figure watching them from the shadows.

All of a sudden Kagein and his comrade were propelled from their position and the least thing they heard was a whisper of shinra tensei.

What followed would never be forgotten by the third party watching from the shadows, a orange haired man levitated off the ground and rose up to the sky, all the while gathering chakra around himself, after about a minuet or so and a second yell of shinra tensei, everything went to hell, as energy was expelled from the man pushing everything away from himself with a pulse of his vile chakra.

Quickly providing himself with a shield of intangibility Uchiha Madara watched as the Hidden Village of the rain was wiped off of the map by that orange haired mans justu. However, Madara noticed a rise in chakra and looked to the left just in time to notice a huge plume of smoke and saw an enormous salamander that towered over the ruble that surrounded it, but that was not what surprised Madara, it was the man on top of its head, he was the famed strongest ninja of his generation Hanzo of the Salamander.

Hanzo looked around and thought " all of this destruction, but what was that justu? that man over there seems to be the cause of this". Looking straight at the orange haired youth Hanzo sneered " boy look over here, for I will kill you for destroying my village". The man still floating in mid air, lowered down to the ground and spoke" my name is Pein; if you will call me anything else acknowledge me by my title, Kami." "Don't take me for a fool boy, you are no Kami, and even if you are I am going to kill you right here and now". Prepare yourself, don't tense up, if you blink you will fall victim to my blade without even giving me a challenge. Just as he finished speaking, Hanzo blitzed Pein with his blade out of his sheath, but as he approached Pein, Pein barely gave him a glance, all he did was raise his hand and then he spoke two words, shinra tensei, following that Hanzo found himself pushed away from Pein, and he flew into a broken down building, causing it to collapse on top of him.

While Hanzo was under the ruble, he was thinking about Peins' attack "what did he do, all I did was approach him and then I was flung away like an insect! Fortunately Hanzo was not fighting alone in this battle and, from under the earth a massive Salamander emerged, and Hanzo resumed his spot on top of his head. "Tanso-san this is going to be a hard fight, but no madder what even if we loose we will die as comrades". " You don't have to lecture me Hanzo, I noticed that our enemy has the legendary Rinnegan " "Tanso-ojisan I believe your age has gotten the better of you, the Rinnegan is a myth".

"Believe what you want Hanzo, but nevertheless do not hold back, this fight will be even harder than when you fought those three ninja 15 years ago". "Even if he has the Rinnegan it doesn't matter, lets show him the might of the Salamander!". As he finished speaking, Tanso charged Pein, but yet again all Pein did was raise his hand and mutter "Shinra tensei" and Hanzo and Tanso were sent flying.

"Hmmm so that's how he does it, control over gravity who would of thought, after all of these years of waiting I can finally see what the Rinnegan can do ", thought Madara. While Madara remained idle, Hanzo made some hand seals and spoke water style: Hydra Bullet and then he spat out seven water bullets in the shape of Hydra heads.

As the bullets flew towards Pein, he was just stood their impassive a ever, and when they were directly in front of him, he raised his hand yet again and with a short mutter of, shinra tensei the hydra heads hit what seemed to be an invisible shield as they froze in mid air and Pein spoke again " Hanzo none of your justu will work on me," all Hanzo did was smirk and focus more chakra into his justu, causing each of the seven hydra heads to split apart and double effectively creating fourteen water bullets that were all heading towards Pein.

In a rare moment of emotion Pein widened his eyes but just as quick as it came, it left and Pein went back to being impassive while forming hand signs causing symbols to appear on the floor, then he muttered elemental barrier: water protection, and just like that the water missiles were absorbed into the archaic ruins that were on the ground. All the while Hanzo thought " such skill in fuinjustu you would think him to be an Uzumaki". Coincidentally our resident Uchiha hiding in the shadows was thinking something similar " of course, the hair, those eyes, and now the skill in fuinjustu, it is not the Senju or Uchiha which inherited the true power of the Sage, but rather the Uzumaki ". Hanzo was still not deterred, " Tanso give me some poison," " of course Hanzo", "combination justu: Wind/Poison tornado" and just like that as Tanso spat out a cloud of poison while Hanzos' wind justu fanned the poison over to Pein". Pein just stood their, and then he moved with haste, muttering " what an annoyance, kuchiyose no justu" summoning a puff of smoke and when the smoke cleared their was another person standing their. Hanzo noticing the new comer was shocked " they have the same eyes, are they related." While Hanzo was stile registering the phenomenon that was Pein, the second Pein raised his hands, and absorbed the toxic air that surrounded him.

Meanwhile, Madara was still fervently enjoying the battle from the sidelines using his excellent eyesight to see the battle from afar.

So he has at least three paths mastered, I wonder how many he can use?

While Madara was thinking Hanzo was utterly worried, "Another ability, and this one is even stranger than the last! Perhaps this man really is a god"?

Pein moved to summon again, he formed a few hand signs and with a mutter of kuchiyose no justu, he summoned a giant rhino. Hanzo seeing the giant rhino knew immediately what its purpose was, so he told Tanso, " go deal with that overgrown mammal, while I deal with Pein". "Very well Hanzo" spoke Tanso as he moved to intercept the rhino. As Hanzo turned to face Pein, he said, "Now may I get the name of the man you summoned?" The summoned individual just stood their as impassive as Pein would while he spoke "Hanzo of the Salamander, I represent one part of Pein, one part of the pain that will soon be inflicted upon the world after I kill you."

Hanzo just smirked, "Pein, you are still to young boy, now let me show you how I fight." Deciding that Pein would be a worthy adversary, Hanzo took off his respirator, which he always wore. "Now listen here Pein, many have speculated why I always wear a respirator. Most assume that I had an accident as a child which caused me to be paranoid about being poisoned, considering my parents died because of a poisonous salamander, I can understand why most would think like that, however they are wrong, or at least partially wrong.

The truth is that I did have an accident when I was a child, but that accident gave me the ability to kill you" "While this has been fun, Pein, you are still many years to young to kill me."

Pein, not noticing anything was wrong figured something was wrong with Hanzo and chose that moment to strike, Pein performed another Shinra Tensei, pushing Hanzo away, causing him to crash into a pole on the other side of the field. Knowing that Hanzo was taken by surprise, Pein rushed in, and stabbed Hanzo in the stomach with a metal rod.

On his last moments of breath, Hanzo wondered "how is he still standing!", he quickly spoke his last words asking "Pein, my breath is filled with poison, that's why I wear a gasmask, I wear it so that I do not kill anyone that I talk to, that's why I told you my story, to by time so that my poison would disrupt your chakra, not allowing you to use chakra."? "It's unfortunate for you Hanzo, but this body is already dead, it is just connected to a chakra transmitter, this body is just a puppet" Although Pein seemed unfazed, on the inside he was worrying " I can't loose Yahikos' body, he was supposed to be the one to bring peace, not me". That's when Hanzo started laughing, "sorry Pein, it looks like you have lost as well, you see my poison is so dangerous because it becomes a part of chakra, it actually fuses to it, so although a bit delayed because of your chakra rod receivers, you are going to die Pein, wherever you are."

Pein, the actual Pein, the one controlling all of his puppets, instantly cut the connection to his bodies, however it was to late, he already felt the disease start to spread through his system.

Madara sighed, " It seems that the Rinnegan user is going to die, such a shame with his Uzumaki regeneration he would have lived, but he had to stab the stomach creating a whole in his kidney, allowing tons of the poison to enter his chakra system."

Nevertheless, it seems orchestrating the fall of the Village Hidden in the Rain has proved prosperous, all I need is to do is study Nagatos' body, and then find another Uzumaki that can activate the Rinnegan.

As Madara warped to Peins true body, he looked at it with curiosity, "it appears that death has made his Uzumaki red hair turn white, perhaps he used his Rinnegan to extend his youth, so when he died his real age shows?"

However, unlike Madara thought, he was not alone, and suddenly Madara found himself surrounded by paper bombs about to go off.

" I figured you would show up Konan, I have been watching you and Nagato, ever since he took on the alias Pein.

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