I only own my OCs

Okay I wasn't planning on writing a Pokemon fic but I am. Anyway before I begin some background: Ash has caught all canon Pokemon and obtained all the Kanto badges and currently is heading up to battle in the league. Charizard is actually obedient, Bulbasaur evolved to Ivysaur, Squirtle evolved to Wartortle, Ash found out about his Aura before he started his journey and has an egg with him. He's also not dense, and is aware of Misty's slight crush but says nothing about it

Ash, Pikachu, Brock, and Misty are sitting as Brock is cooking when a boy asks, "Hey I'm lookin for Ash Ketchum, you know him?" Ash said, "Yeah he's me." The boy said, "I challenge you to a Pokemon battle." Ash gets up and accepts after telling Misty 'A Pokemon battle isn't work' his Ivysaur beats the other trainer's Donphan, and his Wartortle beats the other trainer's Machamp, getting annoyed the trainer sends out 3 Pokemon a Golem, a Venomoth and a Pinsir but Pikachu easily takes them out with a thunder.

Elsewhere a Nurse Joy watched the battle through a camera mounted on a Fearow's neck, Joy asks a figure if he'd like to send the invitation she then telepathically sends a Dragonite to them. Ash opens the invitation and accepts, a three fingered hand stars waving which forms a storm deciding that the storm is a test for the 'chosen trainers' Ash, Brock, and Misty are running to shelter when a trainer joins them saying, "Hey, Name's Korogra Kanbara. So I take it you also accepted that invitation?"

Ash said, "Yeah, anyway I'm Ash Ketchum from Pallet Town. This is my pal Pikachu." Pikachu waves one hand, "Pika Pikachu." Brock said, "I'm Brock" Misty said, "I'm Misty, this is Togepi." Togepi happily chirps, seemingly already used to Korogra. Brock asks, "What's that Pokemon on your shoulder?" Korogra said, "That's Totodile, my first Pokemon. I'm from a small island of the coast of Johto and I was given him by Prof. Elm."

When they arrived at the harbor they were disappointed that the ferry wasn't running due to the storm. Determined Korogra made his mind to go regardless of the storm, outside he enlarged a pokeball and said, "Fearow! Take flight!" The large fierce looking brown bird that emerged hovered over the water and Korogra hopped on its back, slipped his goggles over his eyes and flew toward New Island.

Meanwhile, Ash, Misty, and Brock climbed into a boat with two supposed Vikings who were revealed to be Team Rocket after a wave hit. The boat soon capsized and Misty called out her Staryu and she held onto it soon finding Brock and later catching up with Ash who was hanging on to Wartortle. Soon they arrived and the Nurse Joy asked them to release their Pokemon and wait with the others, as her master will be there momentarily.

Once that was done and they introduced themselves to the others a piercing screech was heard. Ash looked up and saw a Fearow overhead which then slowly descended, when it was 12 feet off the ground it rolled and its passenger free-fell then flipped midair landing on his feet. Which caused everyone to let out gasps of surprise.

Korogra repositioned his goggles to his forehead and Nurse Joy said, "Please release all your Pokemon." Korogra tossed his pokeballs in the air as Fearow landed and from the light appeared Korogra's Flareon, Hitmonchan, Mankey and Kadabra. Another trainer's Hitmonlee quickly engaged Korogra's Hitmonchan in a spar while Totodile played with Ash's Wartortle. Korogra asked, "Hey Ash, when this is over you mind if I travel with you guys?"

Ash grinned and said, "Sure! The more the merrier." Just then Joy's master descends and is revealed to be a Pokemon called, 'Mewtwo' she says that the greatest Pokemon Master is also the world's strongest Pokemon a Trainer says that a Pokemon can't be a Pokemon Trainer. Simultaneously Joy and Mewtwo say, "Quiet human. From now on I make the rules."

Then Mewtwo uses his psychic powers and throws the trainer across the room into the water. Then the trainer sends his Gyarados with a Hyper Beam, but Mewtwo just deflects it back at the Pokémon. Then Mewtwo puts the Nurse Joy out of his power. The Nurse Joy falls, but Brock is there to catch her.

Mewtwo finally explains to everyone that he had the Nurse Joy in his power after he transported her from the Pokémon Center. Elsewhere, Team Rocket walks into a room and Jessie sits on a button that activates the computer which activated the cloning mechanism after playing back Dr. Fuji's message after Mewtwo was created.

The three Pokemon in tanks awaken summoned by Mewtwo, Ash and two other trainers battle the clones of Blastoise, Venasaur, and Charizard. Unfortunately Mewtwo's clones win and Mewtwo decides to take all the Trainers' Pokemon as his prize, before they have time to comprehend they were sucked into what Mewtwo called 'clone balls' Ash goes after the ball that took Pikachu and Korogra follows after the ball that took Totodile.

In the lab with Team Rocket the clone balls are taken into the machine, as the clone tubes fill they see projections of the Pokemon's silhouettes including Korogra's Fearow, Flareon, Hitmonchan, Mankey, and Kadara. Just as a pair of clone balls arrive two voices groan and Ash arrives with Korogra, standing up Ash says to Team Rocket, "I don't have time for your dumb motto today."

And Korogra said, "Outa my way idiots." They dive in after the clone balls and start tearing apart the machine from inside. Once they're free of the machine the clone balls break open and Pikachu and Totodile appear followed by the rest of the Pokemon cloned including Ash's Wartortle and Ivysaur.

The clones arrive and stand by Mewtwo who then reveals his plan to eradicate both humans and Pokemon that hadn't been cloned. Out of the smoke created by the clones showing up two voices echo, "You can't do this, we won't let you." Then Ash and Korogra emerge from the smoke followed by the Pokemon Misty and Brock say, "It's Ash and Korogra."

They rush Mewtwo but end up launched on to the roof, Korogra flips in midair and lands on his feet while Ash gets cushioned by a pink bubble which a small cat-like Pokemon pops and Ash lands on his butt the Pokemon, Mew, giggles and forms another one which gets popped by Mewtwo.

Mewtwo then uses his psychic power to block all the special abilities and attacks of the Pokemon and the Pokemon and there Clones fight but Totodile and Pikachu refuse. Ash and Korogra watch in shock as the Pokemon beat the shit out of each other while Totodile and Pikachu stay strong in refusing to fight. Yet Mew and Mewtwo keep at it, Ash and Korogra finally make it down and say that someone has to take a stand, to say 'No' and refuse to fight like Pikachu and Totodile.

Then they get to their feet and run toward Mew and Mewtwo as their about to attack each other again shouting, "YOU'VE GOTTA STOP RIGHT NOW! STOOOP!" The attacks hit them both as a cloud of dust explodes in the stadium, when it clears Ash and Korogra float for a second before falling and turning to stone.

Mewtwo says, shocked, "Fools, trying to stop our battle." Pikachu and Totodile run over and try to wake them up and Misty quietly says, "Please, no." Totodile and Pikachu then start crying and the other Pokemon follow suit and both begin to glow, watching this Mewtwo says, "I see now that the circumstances of ones birth are irrelevant, it's what you do with the gift of life that determines who you are."

As Pikachu and Totodile's final tears fall the storm vanishes and Ash and Korogra are revived, the clone Pokemon begin to glow, as Mewtwo is using Psychic on them and the clones take to the sky Ash then asks, "Mewtwo, where are you going to go?" Mewtwo replies, "Where my heart can learn what your's already knows so well."

Mewtwo transported everyone to the Pokemon Center and wiped the memory of what just happened. At the Center, Korogra asked, "Hey Ash, Misty, Brock you mind if I join you guys?" Ash said, "Sure the more the merrier." As they left and headed up to the Indigo Plateau for the Indigo League Ash saw Mew flying past and stopped, Misty asked, "What is it Ash?"

Ash replied, "When I first started my journey I saw a legendary Pokemon, and just now I thought I saw another one." Misty said, "You might've just been seeing things." Ash shrugged and Korogra said, "Who knows." They then headed off as the sunset wondering what sort of adventures are ahead.

A/N: I figured I'd get this published while I was thinking about it. I fully intend to include all movies and regions (up to Alola anyway, not sure about the rumored core Pokemon RPG in development for switch.)