Disclaimer: I do not own Pokemon

It was a bright morning as Rayquaza flew through the skies of Hoenn.

I hope no humans show up today, it thought. Their countless losses to me are annoying. The huge snake-like pokemon coiled atop the sky pillar, its favorite hangout and settled in for a nap.

2 days later......

"What is that?!" exclaimed a boy, upon seeing Rayquaza.

Another human? Thought Rayquaza, opening one eye.

The boy threw a pokeball and a winged dragon came out. "Go! Salamence!"yelled the boy.

Enough with this! I am tired of humans barging into my territory and attacking me! They think they own the world! Well, I've got something to say about that! Rayquaza screamed in its mind. It uesd Outrage and blindly attacked Salamence. Salamence instantly collapsed.

"Ah! Uh...go! Blaziken!" The fire pokemon came out and assumed a fighting pose.

Die! Was Rayquaza's mental response, crushing Blaziken. Again, and again, Rayquaza beat the living daylights out of the boy's pokemon, until at last, he ran out.

"Oh no! I have to run!" gasped the boy.

You won't escape! Thought Rayquaza, still fired up. Before the boy could move, he was hit by Hyper Beam, and was blasted off the tower. His lifeless body fell into the ocean, forever.

Pacifidlog Town, 1 week later...

"Nurse Joy! Nurse Joy! Come quickly!" called a man, while running from the beach.

"What is it?" she asked walking to the window of the pokemon center. "Oh my!" she exclaimed. The man was holding the body of a boy. The body was bleeding in too many places to count, and he was missing an arm. His clothes had been reduced to rags.

"I found him washed up on the beach" explained the man.

"How could this happen?" said Nurse Joy. She helped the man bring the body to the hospital. "All of his bones seem to be broken. His lungs have been crushed and he seems to have suffocated to death. But how could he have been attacked? The only thing capable of doing this is a pokemon" summarized Joy, with a nervous look on her face.

"Apparently, this pokemon does attack humans. And it attacks to kill" stated the man.

"If that's true....than all humans are in danger" whispered Nurse Joy. She sighed, and looked out the window, worried.

Somewhere over Johto...

Humans have ruled us for too long! raged Rayquaza as it sped past Cianwood town. I will search all over for others like me. Then, the humans will be doomed! It spotted a group of islands. I will begin there, it thought, and flew down to the island caves.

Route 121, 9 hours later...

May was walking through a forest, near Lilycove city. I need to find some new pokemon before challenging the Sootopolis gym, she thought. As she was walking, she noticed a large sign.

"Safari Zone: Enjoy lots of rare pokemon for our low prices!" was written on the sign.

"I'll try in there," she said quietly. She walked past the friendly guard and paid. He gave her 30 Safari Balls and a friendly wave. She walked into the Safari Zone and started looking for pokemon.

Mt. Silver

Rayquaza was flying past Mt. Silver. A crazy grin inhabited his face. It had persuaded Ho-oh, Entei and Raikou. The four of them were going to Kanto. After getting a few more allies, they would attack.

This is it! We will finally crush all humans! Thought Rayquaza. They will be powerless against our combined might! Already, I have recruited 3 other titans. Two or three more and we will be unstoppable! The pokemon moved off into the Kanto region.

Mossdeep City, 1 day later...

Brendan was finishing his meal. He had decided to eat while waiting for the ship to Sootopolis. The sun was setting in the distance. He cleaned up and threw away his garbage. As he was walking through town, he heard some people talking.

"Yes, my pokemon seem to be scared too," said a woman. "But why?"

"Well, maybe they are sensing some kind of danger," said a man.

Danger? Thought Brendan. It has always been peaceful in Hoenn, he reasoned. His thoughts were interrupted by a ship's horn. "Ah, my ship is here," said Brendan. He boarded and walked onto the deck. 1 more badge... he thought.

Unknown Dungeon, outskirts of Cerulean City...

Rayquaza's group was heading through the Unknown Dungeon. Articuno was now with them, and they hoped to find an ally in this dark place. At last, they found a large platform. In the center was a somewhat humanoid creature. It had a large purple tail, short white fur and dark eyes.

"Why have you come here?" asked the creature. It spoke in their minds instead of aloud.

After they explained, the creature nodded. "I am called Mewtwo, and I will give you assistance," it replied.

We have enough! thought Rayquaza. "We attack tomorrow. Our first target: Saffron City," it announced. Our time has come! Thought Rayquaza. The reign of pokemon begins! It went to sleep thinking deathly thoughts.

Lilycove Harbor, 9:00 P.M.

May stepped onto the ship. She was taking the late ship to Sootopolis. She had been successful in capturing several bug and grass pokemon and Pikachu. She was hoping to use the Pikachu in her battle against Wallace because she had heard that he used water pokemon. She walked through the ship and admired the fancy wallpaper. She found her room and laid down for a nap.

Sootopolis City, the next morning...

Brendan was walking to the Sootopolis Gym. His ship had just arrived. He had stopped at the pokemon center to heal his pokemon, and to stock up on supplies. He walked past the beautiful lake and into the gym. "Wallace! I challenge you!" he called.

"Fine. We will each use five pokemon. Agreed?"

"Agreed," replied Brendan. He threw a great ball. A Manectric popped out and crouched, ready for battle. Wallace had chosen Seadra.

"An electric pokemon. Good choice! However, I won't go down easily!" said Wallace.

A small platform in the depths of Unknown Dungeon...

Rayquaza opened one eye. Then the other. The other titans seemed to be awake already. Rayquaza thought for a moment, then said "If any of us are caught, the rest of us must free that one. Agreed?" The rest of them muttered their agreement. "Then we go! To Saffron City!" shouted Rayquaza. The pokemon traveled through the cave to the beginning, where they met two shadowy figures.

The big red one had long claws, and spikes on its neck. It also seemed to have spikes on its tail. "I am called Groudon. I have heard of what you are doing and wish to help," proclaimed Groudon.

The blue one was in the water. It had huge fins, and a small mouth full of razor-sharp teeth. "I am Kyogre, and I, too, wish to join you," said Kyogre. Now with two more members, the group passed Cerulean City and closed in on Saffron.

Sootopolis City, the Pokemon Gym

Brendan was down to Swampert and Wallace had only Milotic. Seaking had defeated Manectric with Horn Drill, and Brendan's other pokemon weren't as strong. Swampert had defeated Seaking, so it was one-on-one. "Milotic, Ice Beam!" called Wallace.

"Swampert, Earthquake!" ordered Brendan. Both Milotic and Swampert were badly injured after that round of attacks, so Brendan yelled "Finish this, Swampert! Mud Shot!" Swampert fired a stream of mud, and Milotic collapsed.

"You defeated me...fine. Take this badge. You've earned it," said Wallace.

"Thank you," replied Brendan, taking the badge. "Swampert, return!" he said. Swampert came back to it's pokeball in a stream of red light. Brendan triumphantly walked out of the gym.

Back in the pokemon center, Brendan spied a pile of newspapers. He picked one up and read the headline, "Mysterious Pokemon travel through Johto." The article claimed that a group of mysterious and rare pokemon had crossed through the area, but had avoided all signs of civilization.

""Interesting..."he muttered. "Nurse Joy," he called. "How can I get into Johto?"

"Well..." she replied, "I think you can hike through the mountains near Ever Grande City."

"Is there any other way?" questioned Brendan.

"You could get back to Slateport, and get a ship from there, but that would probably take longer." she replied.

"Yeah," muttered Brendan. "Well, thanks," he called, as he walked out of the Pokemon Center.

"No problem," called back Nurse Joy.

Brendan glanced down at the paper again. Another headline, below the first one, caught his eye. "Boy Mortally Injured From Another Cause," read the headline. "Weird," said Brendan. He read on to find out that only a pokemon could have hurt the boy. "But ... pokemon don't kill people," said Brendan. "I mean, they may get mad and rough up a human a bit, but a pokemon that kills people?" He shook his head. "Maybe Johto has answers."

He arrived at the harbor and started looking for a ship to Ever Grande City.

Saffron City, Train Station

A man walked up to the train guard. "Here's my rail pass," he said, bringing out a card.

"Yes sir," replied the guard. "The magnet train – ." He was cut off by Rayquaza's Hyper Beam destroying the train. "- is currently experiencing some technical difficulties. Please come back," said the guard as he eyed the remains of the train.

The man and the guard ran outside to find the city under attack. The people of Saffron City tried to use their pokemon, but it was useless. The legends crushed any and all opposition.

Within an hour, the city was destroyed. All of it's inhabitants had either fled, or were lying dead in the streets. There were no survivors.

"Perfect," snickered Rayquaza, coiling around the Silph Company building. It eyed the destruction around it with a sick grin.

"Allow me to choose our next target," said Mewtwo, floating up to rest beside Rayquaza.

"Sure," replied Rayquaza. "What do you have in mind?"

"Celadon City. There is a man there named Giovanni. He tried to control me, and I want revenge!" came Mewtwo's forceful reply.

"Revenge...a worthy cause," decided Rayquaza. "Let's find the others, so that we can get to the next stop on our killing spree." With that delightful statement, the two parted and went to find the others.

A ship, in Sootopolis Harbor

May was awakened by the announcement "We have now arrived in Sootopolis City." She yawned, and sat up. It was around 3:00 P.M., judging from the sun's position. She collected her belongings, and exited the ship. She made sure that her pokemon were ready and entered the Sootopolis gym.

"I expect you want a battle," greeted Wallace. "So, let's begin!" He brought out his Seadra, and May chose Pikachu. However, Seadra used Twister, which trapped Pikachu inside.

"Pikachu, use your Quick Attack to escape!" suggested May. The small electric mouse responded and broke through. "Now, Thunderbolt!" called May. Pikachu glowed with energy and released a powerful bolt. Seadra was fried, and it collapsed.

After calling back Seadra, Wallace released Sealeo from it's pokeball. "Sealeo, Body Slam!" yelled Wallace. The fat seal pokemon reared up and crushed Pikachu. It seemed like Pikachu was down, but suddenly, Sealeo was encased in an electric field. Sealeo fell over, defeated. "Interesting...that is one determined Pikachu!" exclaimed Wallace. "Go, Gyrados!" he said, tossing another pokeball. A huge sea serpent came out and reared over Pikachu. "Hydro Pump!" said Wallace, with finality in his voice. Huge streams of water blasted through the air and hit Pikachu. Pikachu was thrown against the wall, where it lay, unmoving.

"Pikachu, return!" called May. After thinking for a moment, she said "Go, Nosepass!" The strange rock pokemon emerged and faced Gyrados. "Nosepass," she yelled, "Rock Tomb!" Rocks exploded from all around Gyrados and trapped it. Gyrados seemed to be trapped, but after a moment or two, it broke free of the rocks and glared at Nosepass.

"Gyrados, Hyper Beam!" commanded Wallace. A huge beam of pure energy shot from Gyrados' mouth and smashed into Nosepass. Nosepass fell, but shakily got to its feet.

"Nosepass, hit it with Rock Throw and Rock Tomb at the same time!" cried May. Large rock pillars erupted from around Gyrados, and rocks fell from the ceiling, crushing it. May waited with baited breath as the rocks trembled with Gyrados' rage, but at last the trembling ceased.

"Gyrados, return!" called Wallace, looking worried. "Go, Seaking!" The large fish pokemon landed gracefully in the water and began swimming around Nosepass.

"Nosepass, use Rock Throw!" said May quickly.

"Seaking, go under water!" said Wallace, equally quick. Seaking did not emerge from the water, but Wallace seemed confident. "Now Seaking, come up!" said Wallace abruptly. Seaking came up and blasted Nosepass with water. Without stopping, she also hit Nosepass with her horn. This combo was too much for the weakened Nosepass, which instantly fainted.

"Oh no..." mumbled May. After recalling Nosepass, she chose Bellossom. The flower pokemon immediately started dancing. "Bellossom, charge up for a Solar Beam!" ordered May.

Wallace frowned, then said "Seaking, use Horn Drill!" Seaking tried to ram Bellossom, but Bellossom evaded her. "Seaking, try one more time!" yelled Wallace.

At the same time, May called "Bellossom, go!" As Seaking crashed into Bellossom, Bellossom used Solar Beam for a small explosion. When the dust cleared, both pokemon were lying there defeated. May recalled Bellossom as Wallace recalled Seaking. Wallace released his final pokemon, Milotic, as May released Xatu.

"Milotic, Ice Beam!" yelled Wallace. Xatu tried to dodge, but it was too late. Xatu was frozen solid.

"Only one left..." mumbled May unhappily. "Go, Blaziken!" Blaziken came out and stared grimly at Milotic.

"A fire pokemon?" exclaimed Wallace, surprised. "Milotic, Water Gun!" A spurt of water came from Milotic's mouth and almost defeated Blaziken. Suddenly, May remembered something she had read. There were supposed to be three legendary attacks, one for fire, one for grass, and one for water. Her only chance...

Well, she thought, here goes. "Blaziken, Blast Burn!" she yelled.

"What?!" exclaimed Wallace. Fire radiated from Blaziken and the room was consumed in fire. When the fire was gone, Milotic crashed to the ground at his feet. "Amazing...well, here's your badge," he said to May. She took the badge, and wandered out into the city, amazed.

Well, I better get going. She wandered onto the dock, happy to be alive.