Hey, new story based on the brooklyn Nine Nine episode where jake is left in charge will be updated on Tuesdays. Please read and review.

Disclaimer: I own no rights to Brooklyn Nine Nine

Chapter One: The Mission

"Attention squad, meeting in the lecture room, 5 minutes" the Sarge said to the precinct. Jake sighed and walked with Charles and Gina to the briefing room, taking their seats.

"Good morning squad. you may have heard about the return of the King Killer" Holt said. there was no response

"Right … Well we have recently received some reliable intellect that he has re-emerged. As it was originally my case, before I made Captain, I will be working the case, and as it was originally in the 1-8 with me and Sargeant Jeffords, The two if us will be working on this together. As a result, for the 2 days we will be gone, the precinct needs an acting captain. I have concluded that the way to fair way to procure a name is to put the names in a hat. inside we have Rosa, Charles, Amy and … Jake" he said

"You missed me and Hitchcock" Scully said

"No, I didn't" Holt replied. Hitchcock and Scully seemed pleased with the answer.

"Sargent if you would do the honours" Holt said handing him the hat. Terry pulled out a name

"And the acting captain is … Jake" Holt said

"NO!" came the cry of Amy. However, the pleased cries of Rosa, Jake and Charles drowned her out.

"Peralta, I will not back down on my word, but you had better. Not. Mess. Up or so help you God I will demote your ass down to maintenance." Holt threatened menacingly. It did not however dampen Jake's mood.

"Understood Sir" He replied nodding. Then going off to high five Charles and Rosa.

"Our stakeout should last approximately 2 days. During this time there is to be no contact with us. Even a simple 'Hello' Could blow the whole operation Understood" Jeffords said seriously.

"Yes sir" came the chorus of agreement.

Holt and Jeffords left soon after lunch

"Attention please" Jake yelled standing next to Holt's office door. They all quietened and looked at him. Interest peaked.

"After the incident last time I was in charge, I am proving my authority first. Any issues, do not wait to come and find me. I expect no decrease in productivity, and I do not want to let Holt down. I'm too handsome to be a janitor" Jake stated. They all nodded in agreement before getting back to work.

-3 Days Later

"Squad. Briefing room 5 minutes" Jake called as he walked through the bullpen to the briefing room. The rest of the squad followed him in.

"Attention squad, I know the last three days have been uneventful, but we have another 43 arrests to slap in Holts face. He said he was expected around lunchtime" The room cheered

"I think that is a great win" Charles said

"Thank you Charles" Jake replied. He continued to brief them on open cases and discussing who was up to what that day.

Lunchtime came and went with no sign of Holt. They clocked out and went home.

The next day showed no appearance of either their Captain or Sargeant.

At Lunchtime, True to his word, Jake hadn't contacted him, despite worry. At lunchtime, 24 hours after their expected back time. He shut himself in the Captains office. The squad was unusually quiet and all working hard. Even Hitchcock and Scully.

He got on the phone.

"Hello. I'd like to request a relief team please" He said

"Of Course. which case?"

"IT99-KCBD-08" Jake replied

"And your reason?"

"The crew was expected back 24 hours ago and we have had no contact from them" Jake replied

"Ok we'll send a crew straight there. And your name is?" Control asked

"Jake Peralta. Acting Captain in Holt's absence" Jake answered

"Of course, Peralta we will intercept this as a matter of urgency."

"Thank You" Jake responded, hanging up.

3am - The Next Morning -

Buzz…Buzz…Buzz

Jake rolled over and picked up his phone, pressing it to his ear

"Hello?" He mumbled, sleep clouding his speech.

"Peralta. Gather the Nine-Nine. You are needed at the Precinct immediately. Matter of Urgency." Came the voice of an operator of One Police Plaza

"Ok" He said. he knew that tone of voice. He was fully awake instantly. Hanging up, he jumped up and pulled on some clothes. making his way to the Precinct, calling everyone on the way.

Once he got inside he took a seat at his old desk, waiting for the others. Rosa was the first to join him, looking like it wasn't the middle of the night. She was dressed and as beautiful as ever. But Jake had more on his mind than his infactuation with Diaz.

"Jake what's going on?" she asked. her voice soft, concerned "You sounded so urgent on the phone" She added

"Wish I knew" Jake replied. "I told you exactly what One Police Plaza told me" He said

Boyle and Santiago quickly joined them. Followed by Gina, Scully and Hitchcock.

After a few minutes of speculation, a member of the relief crew walked in.

"Hello. I'm Detective Hains. Please take a seat, I have some troubling news" He said. They did as he said.

"The rescue mission was set out at 1400 Hours yesterday, after prompting of concerns from your Acting Captain Peralta" He begun. "Upon the pre-decided stakeout destination, no evidence of the plan or stakeout was found. We traced back on the clues that they found previously, that led them to that location for a stakeout. During which we found an address for an abandoned warehouse in which we found Sergeant Jeffords" the Crew member said.

"That's great" Boyle said. at that moment, out came a half asleep Terry.

"Sarge?" Jake asked, poking him slightly.

The Sargeant jerked abruptly yelling 'Stranger Danger' at Jake.

"Jake put his hands up and apologised. The Sargeant calm down a little But still looked incredibly panicked and scared.

"Hains what's wrong with him?" Jake asked

"He has severe amnesia. Upon a basic evaluation, he was beaten badly with multiple wounds to the head. Peralta, you called us at the right time. He had already gone 2 days without food or water. Currently he is on his way to the hospital for a deeper analysis, then he will return to his wife. we don't know how long he will be on administrative leave … Perhaps indefinitely … But What I do know is that there was no trace of Captain Holt at the Scene. We are completely unaware of his whereabouts and the search will not be taken lightly. As for your position, I would suggest to go to Deputy Chief Wunch to ask for further directions" He said

Jake sighed

"Right … Thank you Hains. Please escort Sargeant Jeffords to hospital immediately" Jake said. Hains nodded and turned to the door, Jeffords following him.

Jake turned to face the rest of the squad.

"I suggest you go home, get some rest. I will sort out the 'In command' issue and will report back to you all in the morning" Peralta replied. He walked back into the office, dismissing the other detectives, who reluctantly went home.

Jake sat at Holt's desk and picked up the phone

"Good morning, sorry it is early. I have to speak to Deputy Chief Wunch please. Tell her its detective Peralta speaking on a matter of urgency" Jake said. The dispatcher put him through, and he waited on the ringing line.

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