This story is set in an alternate timeline after "Twilight Princess", diverging at some point before the events of "Four Swords Adventures", in an era called as the "Shadow Era" (Source: "The Legend of Zelda: Hyrule Historia"). The regions from the land of Hyrule still has some of the names from Twilight Princess, in case you want to look up for a map, but centuries have made changes in the world (as always happens), though there are still some places that are more or less the same.
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