A/N: So... I was reading this other fanfic story called "Exile". It's about Raikou vs. Team Rocket. And that was basically my inspiration to write this story. This will include a good amount of Pokémon parings. Don't know which ones exactly. I posted the main parings in the given search description, but there may be others too. If you do not ship this paring, then there might be another chapter with the paring you like. I'll post all of the chapter parings at the end of each chapter once I have written enough :) (Read the authors note at the end too XD)Well... Whatevz. Begin :)

Chapter 1, Paring 1: Mewtwo x Deoxys~ We're Both Aliens...

Mewtwo was never one of the legendary's to show emotion. He'd always hide away to find his peace of mind without anyone disturbing him. He'd spend most of his time reading books at the Hall of Origin, filling his mind with all sorts of knowledge. Once, he had came across a book that told a tale from back when Pokémon were called "magical creatures", and Pokeballs had yet t exist . It mentioned a gigantic meteorite hurdling toward earth in the Shino Region, that would threaten the existence of all living beings on the planet. Just before it crashed into the surface, a particular magical creature rushed in and saved the world from devastation. However, it was at the cost of its life. Mewtwo knew this story all too well. The day when Arceus gave Domos the Jewel of Life. The writing in the book was from 1,000 years in the past, and the intelligent manmade Pokémon was still able to crack its code. When Mewtwo thought about meteorite's, he'd then think about the universe, and all of its space. Sometimes, it would bother him, because that was one code he just couldn't crack. He was created based upon the latest up-to-date human knowledge, so that everything humans have known and more- all of it installed into Mewtwo's brain. There lied the problem. Humans, and Pokémon, had yet to explore the universe. Because of this, there are little recourses about space, other than books about constellations. Mewtwo would literally die to know what's out there. What other beings could possibly exist beyond the limits of Earth's atmosphere? He didn't know for sure, but what he did know was the fact that Deoxys came from somewhere other than Earth. Where? Not even she knows.

This also bothered Mewtwo. How could you not care about where you came from? Sure, the here and now is what matters most, but Mewtwo would often ask Deoxys 'does it ever bother you that you don't know where you're from?' or 'how come you're never worried about where you came from?' This would anger Deoxys on occasions if he'd ask frequently, but otherwise, she'd either respond with a 'no, not really' or a 'because I prefer not to worry'. If she didn't respond verbally, she'd just shrug and ignore him. Mewtwo was extremely curious about the female DNA Pokémon. Not only that, but he also admired Deoxys. He'd admire her for various reasons. Not only did she seem care free (except when around Rayquaza), but she seemed care free in a way that the manmade Pokémon did not understand. She's often calm, with a level head (which he was not). Also, Deoxys was nice to everyone in the Hall of Origin. She'd even try to cheer up Rayquaza when he was in a bad mood. Mewtwo just didn't get how one could always be calm and loving to everyone. He'd always blush when he thought of her, though his emotionless personality.

Deoxys was... well... an alien to this world. However, all the other legendary's treated her as if she was born right here on planet Earth. Of course he had his doubts, but none the less, he treated her as an equal member as well. They didn't talk much. This may be the result of Mewtwo's lack of conversation and emotion, but there was something else contributing too. He was very shy when she was around him. Shyer than normal. Occasionally she'd shoot him a happy expression when conversation with other legendary's, but he did not respond with a friendly wave, nor a warming smile. This made Mewtwo angry at himself. He just didn't know how to respond. This time, he'd make sure to take the first step.

While Mewtwo was pondering his thoughts, Deoxys was floating above one of the many lakes surrounding the Hall of Origin, enjoying the evening breeze. Though Deoxys was good at socializing with others, she wasn't any better with emotions than Mewtwo was. She knew the basic happy, sad, angry, but didn't know others like embarrassment, depression, shock, or loving, especially love. Unlike Mewtwo she had never experienced it, and knew nothing about it. Mew two hadn't experienced it either, but he knew the emotion, and signs of it being present. Deoxys was naive to love, but only because she never have had the need for it. She had all of her fellow legendary friends that surrounded her with support, and that's all she ever needed. Never before has she loved someone, or thought about loving someone. Deoxys was just happy to be with her friends, and that's all that mattered to her.

It was near midnight, and the stars were shining bright as ever. Mewtwo was pacing back and forth hastily behind the trees and shrubs near the lake in which the extraterrestrial Pokémon was hovering above. This was his chance to tell her how he was feeling. He didn't know he loved her, he thought that all the frequent pondering and worry was a sign of something else... other than love. Mewtwo made his decision, and calmly emerged from the vegetation.

"Hey"

That broke the calm silence of the night breeze, and Deoxys turned to make firm eye contact with the manmade Pokémon. "He-Hello." She responded. Deoxys was a bit confused at first, but then gave an expression of happiness, and hovered an inch above the ground. She and Mewtwo met by the side of the lake. They stood/hovered in silence for a few minutes, enjoying the cool midnight breeze. Mewtwo felt at peace with the DNA Pokémon. It was like her care free attitude, and positive personality was contagious to him. He slightly looked at her from the corner of his eye. Her eyes were closed, and her tentacle arms were swaying back and forth in motion to the wind. Her metallic skin glistened underneath the light of the moon and stars. Mewtwo blushed at this. She looked so peaceful and beautiful. He couldn't stand it.

"So..." He began with an emotionless voice, covering his nervousness. She turned slightly, and opened one eye. "Yes?" She responded quietly. Her tone was a light, calm and soothing tone. This made him blush a bright red that was visible against his light purple fur. "You ok? You look red." Her voice began to adapt the tone of one with worry. "Are you sick?" She flew a bit closer to him, and stared at him strait on. "N-No." He managed to say, under the pressure. "Oh, I see." She turned back to the lake, and closed her eyes again. It was obvious before, but now he knew for sure that he loved her. "D-Deoxys?" He said slowly. "Hmm?" She responded. "I-I would like to... tell you s-something." Deoxys eyes slightly widened, and she once again flew closer to him. "Well, I'm listening. What's up?" She asked with a soft expression. She giggled a bit. 'How could she be so nonchalant about this?' Mewtwo wondered. He pushed aside the curiosity, and looked her strait in her shinning eyes. "Deoxys..." He then placed both of his hands gently on her shoulders, caressing them. She flinched at the contact, but didn't pull away either. A faint blush appeared on her cheeks, which wasn't visible, but Mewtwo could indicate her mood, and smiled softly at her. Deoxys glanced at the ground with an embarrassed expression. 'She looks so cute.' He thought. Mewtwo pulled her in an inch closer. She flinched once again, but softened her gaze at the manmade Pokémon. Unconsciously, Deoxys slowly wrapped her tentacle arms around Mewtwo's neck in a loop. Mewtwo then blushed uncontrollably, but didn't bother hiding it. All of the newly felt emotions were only bringing them closer.

"Wh-what is it... Mewtwo?" She asked.

Closer

"I... just want to say...that..."

Closer

"That..."

Closer

There was a pause. Mewtwo forgot about all of his emotionless ignorance, and replaced it with courage. The courage that would let him say...

"I love you, Deoxys"

"Ah?!"

She was in total shock, another new emotion. "You... wh-what?"

"I love you."

Then, he pulled her in to a warm embrace, one in which true love radiated from. Deoxys eyes widened. "You... love me?" She asked for confirmation. "Yes." Mewtwo whispered. She pondered his answer for a few seconds, then closed her eyes, and rested her head below Mewtwo's right shoulder. "Ha." She laughed. "I never thought you'd be the emotional type." He chuckled a bit himself. To be honest, Mewtwo never thought he'd come to love anyone. Especially one from outer space. Ignoring the thought, he held her even tighter. "I never thought so either. But..." He pulled back a bit, and stared at her lovingly. "For once... my theory was proven invalid." She laughed softly at that. His science talk was something all the legendaries enjoyed. "Ha. Your theory?" Deoxys suddenly flew in back of him, and wrapped her tentacle arms around his neck in a loop once more. "Well..." She began. "My theory is..." She whispered near his ear. "I love you too." Then, she spun him around so his face was only centimeters away from hers. "Is my theory 'invalid'?" Now it was his turn to laugh slightly about the way she imitated him so perfectly. "Nope." Mewtwo responded. "That theory is one to be proven correct." He finished. "Oh... really?" She questioned. Deoxys was enjoying the playful moment. Both chuckled, then Mewtwo pressed his lips to the part of Deoxys face where a mouth would be. Her eyes widened, but only slightly at the contact being so close and direct. The DNA Pokémon felt disappointed at first. If only she had a mouth to return the favor. To experience the same feel of lips touching. Deoxys pulled away only an inch. There was heat surrounding the two, and both were blushing deeply.

"M-Mewtwo..." She managed to say. "I... I'm sorry. I wish... I wish I-" She then was cut off by Mewtwo laughing slightly again. "You don't have to kiss to show your love." He commented. "I... don't?" She asked. "No." Mewtwo pulled her as close as he could. "Stay like this. Hugging is just fine." This brought joy to Deoxys. She always assumed that a kiss was needed to show love. She tightly embraced the manmade Pokémon in a loving hug. Both were calm and happy in each other's arms. "I love you, Mewtwo." She sighed. "I'm so happy. I never had the need to love before. And now... it's like... love from another world. I never thought to find love on this planet, despite its beauty." She explained. "I always felt like an alien, thought everyone else treats me like I've always lived here. I may seem happy and care free all the time, but... in reality..." Deoxys hugged Mewtwo tighter, as if she was holding on for dear life. "I'm... really sad. A-And confused." She sobbed. He had felt the same way. Sure, he knew about planet Earth, but not everything. Only as much as humans knew, which was a good amount, but not every last detail. He held her closer. "I completely understand. We're both aliens to this world." He stated firmly. Deoxys giggled, and brought her head up to look at him. "Thank you, Mewtwo." And with that, both looked up at the moon and start, while holding each other close. Never again would either of them feel... lonely. Only loved.

A/N: Alright. First paring. Thought this would be an interesting, out-of-the-ordinary paring, though I'm sure one or two other authors wrote about his couple before. Anyways, hoped you liked it :) Next chapter will hopefully sound more familiar: Lunareclipseshipping, or for those who don't know... Darkrai and Cresselia. See you all then. And requests/suggestions for the future are welcome :)
~Black-Rock-Shooter-X

Ch1: Mewtwo x Deoxys
Ch2: Darkrai x Cresselia
Ch3: Dialga & Palkia
Ch4: Arceus/Giratina