Link was called to Hyrule castle by the Hyrulian King; There Link was escorted by four guards to the king, who gave link a new quest. The quest of finding Princess Zelda who was taken by someone while she was out picking flowers, the guards that were with her were killed. He called upon Malon who was caring for Epona, while he went to see the king. He got back his horse back, kissed her and rode off into the sun set.
He'd been traveling for two day's when he stumbled upon an ice statue of a girl with eye's that moved. He cast Din's Fire but it didn't work, so he played the Suns Song, and all the ice melted away from the girl. She instantly drew out a sword as she jumped back from him.
"Who are you?" She demanded cautiously
"I am Link, I am on a mission to find Princess Zelda, Who are you?" He asked stubbornly but curiously
"I am Zola, and I too am supposed to find Princess Zelda," Zola admitted
"Oh good, you can assist me then," Link spoke as he held out his hand to shake hers
Working together Link and Zola soon became close friends. After two days Zola admitted to Link that she was in fact a god sent to guide him through the tough trails that lay ahead. Link Started to like Zola a lot.
One sunny morning they were attacked by a follower of Gannondorf. Zola took him down using her spells while Link couldn't fight him at all because he wasn't strong enough.
One morning Link woke up and Zola was gone. Her stuff was gone too, nothing remained but a note.
Link,
If you ever want to see Zelda or Zola again you'll keep traveling straight until you reach the water fall then cross the stream and go under the water fall. There you find me and them. You'll also find out the Princess's secret.
Gannondorf
He read it and read it over again. He couldn't believe it, his arch nemesis has got the Princess and his best friend. He was frustrated beyond all belief. He went straight there and busted into the room using Zelda's Lullaby.
Zelda, Zola and Gannondorf were there waiting for him, standing very silently.
"It's about time that you've arrived, actually you're late," Gannondorf hissed with a chuckle
"Link be careful, you have no idea what diabolical scheme he has planned," Princess Zelda's worry was as clear as ever
"Oh shut up, you dumb Princess, why can't you be good like Zola," Gannondorf remarked
"Yes Zelda, why can't you be good like me," Zola said with a wink that sent shivers up Links back
"Zola, Zelda, I'll save you don't worry," Link Said sounding really strong.
"Zola, Take Link down," Gannondorf ordered with a smirk
Zola moved directly across from Link, Who was looking worried. Clapped her hands three times and ropes shot around Zelda and Gannondorf out of nowhere. In an fairly evil sounding voice, She spoke to him as she called upon her weapons.
"Zelda has a big secret from you Link, I am her Secret, I am Zelda's twin," Zola spat out these words
"Yah so, I knew something was up when I saw you together there, your helping with his diabolical scheme, you set me both up," Link said surprised at the courage in his voice
"Very good Link, In fact I am going to kill him and become the most powerful evil being ever, You won't ever stop me, cause I became your friend, now I have a good sense of what your presence feels like," She walked up to Gannondorf
While she was saying good bye to her master who trained her, Link was sneaking up behind her. She turned around and bound him with a paralysis spell. She turned back to Gannondorf and she put her fingers on the gem imbedded in his forehead, and she crushed it, as it shattered, blood sprayed out of the gash and Gannondorf dropped dead. She turned to Link who was looking at her blood covered clothes and the pool of blood Gannondorf was lying in. She took the spell off of him, he stood without any trouble.
"Your turn Link," as she disappeared and reappeared holding her sword right through Link, He dropped to his knees
"Why are you doing this Zola, I love you and I love her too," Link said as Zola ripped the sword out of his chest, spurting blood droplets to the floor
"Because no one has ever loved me, and for that I cause pain," Zola said, Zelda got to her feet
"I am not the person you think I am, Link I was using you for power, now I am done with you," As Zelda pushed him so that he was lying on his back and couldn't move
"Good bye Link," Zola said looking faking a sad look
Zola had the dagger raised high and was going to kill. But Zelda pushed her out of the way and plunged her dagger deep into him, killing him instantly.
Meanwhile back in Hyrule Malon, Link's wife bore his child on the day he was killed. When word of his death had reached her she decided to call the baby Link, and by the time he was ready to learn how to fight like his dad, so started to learn how to fight.
Zola and Zelda killed their father and took over the Kingdom making it worse then it was when Gannondorf had ruled it. Malon took her son to the Kokiri Forest, to hide the baby under the watch of the Great Deku tree and to protect him.
She went to the castle and Zola killed her. What Zola didn't know was that Malon had a spell placed on her. So that when she died Link's father would stay dead but her son would always have his father's nightmares in his head.
Malon the goddess of nature was cremated. But her son would carry the legacy of being The Hero of Time. Just like Malon's Husband Link carried The Legacy, And has now passed it to his son.