Six years ago the Village Hidden in the Leaves ad come under attack by a demon that was known as the nine tailed fox Kyuubi. It had destroyed much of the village before a brave man known as the Yondaime Hokage Minato Namikaze came forward and sacrificed his life to seal the demon within his newborn son Naruto. Now that is what everyone thought had happened but the truth was that the Yondaime never died. He knew that because of what happened that his son would most likely be hated so he faked his death and left with his son, starting an organization known as Akatsuki to protect his son from all who would do him harm.
For a month and a half they lived in peace in their headquarters and it was then that they noticed a change in baby Naruto. His hair was slowly changing from golden yellow to red he was stronger than an average child so they started training him right away in all of their techniques. Once he had turned a year old they were all surprised to see that he could use the Byakugan as well as the Eien Mangekyo Sharingan, the Rinnegan and another that they did not recognize but made his eyes look like whirlpools of golden water. The Akatsuki had no more to teach little Naruto so they started to go from village to village in the dead of night to steal their forbidden scrolls and other technique scrolls so that they could train him as well as they could. A few years later they were finally back in Fire Country and Naruto was already six. His father wanted him to return to Konoha to enroll in the academy so he could make some friends even thought he already had skills that made him something no one knew about.
So after bidding farewell to all of his friends Zabuza, Haku and those he considered family he went with his fiance Obito, who wore an orange swirl mask and called himself Tobi they made their way to Konoha so they could become citizens and the little boy could become a great shinobi for the old village of his father. However the Akatsuki did not want him to be hated for his immense power so they told him not to use his true powers unless he was training with Tobi until he made genin so they gave him deep blue contact lenses to hide his Byakugan and kept his Akatsuki garments except for his ring but he kept it hidden with fingerless gloves. Once he had bid farewell to all of his friends and family all over again they watched the others leave and then left themselves so that they could start on a new adventure in a village they had not been to before...