AN: Just a new thought popped into my head. It made me wonder: What if Madara was a girl? What if Naruto was her son? This lead to the creation of this story! This is an AU, so don't get upset with me if some people act differently.

Naruto x Karui
Naruto x Satsuki (Female Sasuke)
Naruto x Samui

(Chapter 1)

Madoka Uchiha was one of the most powerful shinobi in the world, having been considered the rival of Hashirama Senju in her prime years. It was no wonder that she never truly had time for the thought of starting a family, considering that she had more important things to do.

But, as time went on, and her Sharingan kept her young and graceful, she had begun to entertain the thought of a family. Certainly she would be an excellent mother, as she had read several books about child rearing and development, as well as the fact that she wa superior to everyone in all ways. What made her pause was who the father would be.

She was picky about the men she took to bed, always choosing only the strongest, smartest, and best to even catch a glimpse of her wonderful body. But, those picking were getting smaller everyday. No one ah had met in the past few years was worthy of even takin a single look at her gorgeous body, and even fewer had what I takes to keep up with her dominating nature.

So it came as no surprise to her that she had immediately looked at the two Senju brothers, Hashirama and Tobirama. She weighed the pros and cons of each one. Hashirama was powerful and smart. But he was also supremely loyal to his wife, MIto Uzumaki, the Kyuubi Container.

Tobirama, on the other hand, had looked at her in lust before. Not only that, but he was powerful. Not as powerful as Hashirama, but powerful all the same. Therefore, he was her prime candidate for impregnating her.

That night, she was pleasantly surprised to find that the white haired man had been drinking, making the seduction go that much easier. She had entered his office, wearing a traditional kimono, and sat down.

They had talked, and drank, and pretty soon, he was drunk enough. There was no romance, no kissing or feelings, just a carnal desire for the pleasures of the body. She kept his drunk while keeping her mind sharp and clear, she had him ejacuklate several time within her, ensuring that the fertility drugs she had taken made 100% sure that she was pregnant.

After several weeks of waiting, she got her answer. She had hidden from the Uchiha Clan her plans, as they would no doubt try and control the child in an attempt to control the village. She had no intention of allowing that, so she hid herself away and eagerly waited for her pregnancy test to finish.

It was positive.

After the great news, Madoka went about preparing to leave the village, having determined that it would not be a great place for her to raise a child, especially when said child would no doubt have a resemblance to the Nidaime Hokage. Questions would be asked, questions that she would be unable to answer without giving away her plan, and child, to the entire village, giving the Village Council a reason to kill her.

She had packed everything she would need, weapons, scrolls, food, and even all of the baby items that her newborn would need. These items included a crib, several blankets, pillows, clothes, and some items that weren't necessary, things such as toys and stuffed animals. She put all of these in scrolls, but had a nagging feeling that she was forgetting something.

She went over her mental checklist and had no idea what she was forgetting. Deciding to ask Mito, who had recently given birth to a son, she made her way to the Senju Compound. She talked at length with Mito, confident that the Shodaime's wife had no idea of her condition. What she had, apparently, forgotten was diapers.

Now that she had rectified her mistake, Madoka took one last look at the village that she had helped found, a small, sad smile on her face that things had to turn out like this. No doubt that Hashirama had discovered her actions, and was searching for her alongside Tobirama. Time was of the essence here, and if she messed up once, she wouldn't be the only one suffering.

And as Madoka Uchiha, the Strongest Uchiha in History, she couldn't allow herself to let them harm her child, whether it was born or unborn. She needed a place to stay safe and secure, all the while protected from any of her enemies. She needed a place to put the seals that she had been studying that would keep a single place out of the natural space-time flow for an extended period of time.

And so, she decided to head to the Land of Water.

With all of her items sealed away, she glanced back once, her Sharingan active, and leapt into the trees to begin her plans for the future.

(One Week Later)

Madoka arrived at a small island off the coast of the Land of Water, the perfect spot for her to set up a home for the moment. Using the DNA of Hashirama she had extracted during their past fights, she grew a two story house, complete with wooden furniture.

She then set to work on the seals for the island, putting them at key sectors around the small island, she made 100% sure that everything was perfect. The seals would keep this place hidden from the outside world for up to 60 years, the perfect amount of time for her to get all of her plans started, and for her to ensure that her child would be young enough, as the seals would make it seem like only five years had passed.

She unloaded all of her supplies, books, weapons, and child care objects and sat in a comfortable recliner, rubbing her stomach with a soft smile.

(Two Years in the Seal- 24 after Madoka Left)

Madoka smiled at the black haired baby boy she held in her arms. She had given birth to him Two Years ago and had come to a very clear conclusion: She needed help. The books had prepared her for having the child and getting things ready, but she needed to go out to Kirigakure and set her plans in motion.

To do that, she needed to leave her son, whom she had named Naruto after the Maelstroms that periodically surrounded the Island. But therein lies the problem: Who would watch over Naruto? It wasn't like she could just go out and kidnap someone to do it...

She paused at that thought and stood, placing Naruto in his crib, she walked outside, her maternity dress whipping in the wind. She had very carefully kept an eye on all that happened in the years she had been missing. She had observed the First Shinobi World War, and had been observing the Second going on. She had noticed that the fighting had taken place in the Land of Rain, and that three children had caught her attention.

They had been trained by Jiraiya the Toad Summoner, and in time, they would be excellent caretakers for her son. A rustle beside her caught her attention and she said. "Zetsu, what have you got to report?"

A man slowly appeared from the ground, one half of him white, the other black, with what looked like a plant growing out of his sides. He was Zetsu, an experiment with Hashirama's bloodline from Kusagakure. (AN: For the record, I will not be dividing Zetsu's words between black and white.) "Madoka-Sama, those three Ame Orphans have become strong, almost strong enough to watch over Naruto-Kun. Do you wish me to go and retrieve them?"

Madoka thought it over and shook her head. She would get someone less likely to betray her. "No. But, I need you to go to Kirigakure and find a pediatrician, preferably a civilian and female. Then alert me."

With his orders, Zetsu sank into the ground.

(Kirigakure)

Hitomi was in her office when the door opened and an attractive black haired woman walked in, wearing an expensive looking white kimono. For a single moment, Hitomi looked her in the eyes, and everything went black.

(The Island, Now named Maelstrom Island)

When she awoke, Hitomi was in what she assumed was a nursery, the same woman from before sitting in a rocking chair, reading a story to a child no older than two. Hitomi was strapped to a chair opposite her, and when the woman put the child down in his crib, she turned to her captive. "My name is Madoka Uchiha. I have commandeered your services to look after my son while I take care of some business I have. If you refuse, I will be forced to terminate you. if you accept, you will be living here for the next year, when you will be sent back, with no memory of what transpired. Do you understand and accept?"

Hitomi didn't hesitate. "Yes."

The woman, Madoka, nodded and untied her, all the while explaining the rules of the house, as well as the rules about Naruto.

(One Year Later- 36 years after Madoka left)

True to her word, Madoka let Hitomi leave after one year, when Naruto turned three, and she had set up a more permanent care takers, or takers in this instance. The Ame Orphans would have died at the hands of Hanzo the Salamander if it hadn't of been for the Uchiha's intervention, and as such, they were more than willing to look after the boy.

As she lead them to the house, the sound of little feet running caught their attention as a black and white blur ran into Madoka. Upon closer inspection, it revealed to be an older Naruto. His hair had started to lighten, taking on a white coloring, and he had intelligent dark eyes. He wore a black T-shirt and pants, and was barefoot. He had a smile on his face as he nuzzled with his mother. "Kaa-Chan!"

Madoka gave a motherly smile at the child she had birthed as she held him in her arms. "Naru-Chan, where are your shoes?"

The small child made a face at the word shoes. "Yuck! 'oes bad!"

The Ame Orphans all looked at the scene, small smiles on their faces as they were lead to a nice looking house. Madoka turned to them, setting Naruto down as he went to play with 'Uncle Zetsu' in the backyard/ training ground. "As you can see, that was Naruto, the child you will be looking after. Everything you need is here, as well as enough room for all of you. Feel free to train, but be conscious that Naruto also needs to be trained as well, something I require you to do. Also, this island is special. There are seals on it so that one year here, is twelve off of the island. In one and a half years Island time, Naruto will emerge and be sent to Ame, where the three of you will be leaders. There he will be trained until he is an appropriate age and becomes a junior member of a group I will start: The Akatsuki."

(One Year Later- 48 Years Later outside of the seal)

Madonna watched as her newest follower/partner healed in a bed on Maelstrom Island, havin finally convinced him of her plan after he witnessed the death of his friend, Rin.

All her pieces were falling into place, and now she just had to wait for Naruto to be five, when he could safely set foot into the world.

And when he did, Kami help the Elemental Nations.

AN: And I'll end it here. Next chapter, we have a Time Skip to Wave Country, where Naruto makes his debut as another Uchiha. There will be flashbacks to his training. He will be, by my calculations, Itachi's age. And yes, he will have the Eternal Mangekyo Sharingan. And yes, everything in Canon happens, only to a female Uzumaki who has yet to have a name.