Summary: Everything in Chuck Bartowski's life is about to change. What do a teenage boy, Daniel Shaw, a mysterious organization, and "Magic," all have in common? The Intersect 3.0

Disclaimer: *Sigh* Alas, I do not own Chuck :(

Chapter 1: Chuck vs the TeenSpy

Chuck Bartowski, ex-secret agent, senior supervisor of the Burbank Buy More Nerd Herd, current Orion, etc. sat behind the Nerd Herd reception desk. He was reading the latest copy of GameSpy Magazine, when a boy around the age of 15 walked up to the desk holding an iPhone 4.

"Hello there young man, my name is Chuck, how can I help you today?" Chuck asked hoping for a chance to mess with the new iPhone.

"Hi, you see, my computer's down, I was wondering if you could help me set up my new iPhone?" asked the teenager.

"Oh,sure," said Chuck as the boy hands him the phone, "just let me plug it here…There we go, did you know that with some tweaking, the core processor of the iPhone 4 could be made to run the real Mac OS X Leopard?" asks Chuck Confidently.

"No, I didn't, that's awesome!" said the teenager, genuienly intrigued.

"Yeah, it is pretty cool if I do say so my self." said a rather confident Chuck. He turns on the phone, admiring the retina display. After a few minutes, Chuck had the phone ready for the teen's information.

"Name?" begins Chuck.

"Sam Williams" replies the teenager.

A Plane

Several images of Sam Williams' different passports.

A record of CIA recruitment by Langston Graham

A list of the projects he was invovled in, most being marked Above Top Secret

The Words: PROJECT BLACKWOOD

A Plane

Chuck blinks several times, recovering from his flash.1

"Hello? Are you okay?" the Teenager asked, concerned.

Chuck blinks twice, looking at the teenager in astonshiment.

"Did you just flash?" asks the teenager.

"H-How…?" said Chuck.

"Trust me, Chuck, I know a lot of things." Said the teenager.

Chuck, out of both sudden fear and desperation, pushed the silent alarm under his desk. Seconds later, Chuck saw his girlfriend, Sarah, approach behind the teenager, amd put a gun to his back, careful not to let anyone see.

"Just walk out slowly, and you won't get hurt." said Sarah.

"Ahhh…Agent Walker, so nice to finally make your acquaintance," said the teenager. She pushes the muzzle harder into his back.

"I said, move it!" said Sarah, anger rising in her voice.

"Alright, alright, I'm moving!" said the teenager with a cocky smile.

…...

The whole team had gathered in castle, Chuck, Sarah, Casey, and even Morgan, were situated in Castle's main room. Sam had been deposited in one of the detention areas. Suddenly, Beckman appeared on the screen, looking slightly panicked.

"I'm sorry to have to tell you like this, but it's a good thing you contacted me about Agent Williams," said the General.

"Why's that?" asks Chuck.

"Because, Mr. Bartowski, Agent Williams shouldn't be anywhere near Los Angeles. My Records indicate he should be in Puerto Rico." said the General.

"General, if I may be so bold, can I ask how a teenager became a spy for the CIA?" asks Morgan.

"I'm afraid that's above all of your ranks, Agent Grimes." said the General.

"Its okay, you can tell them," said a voice from behind them. Every one jumps, and those who have a gun, point it at the source of the voice. Out of the shadows emerges Agent Williams.

"How did you get out?" grunts Casey.

"I helped design Castle, and, as if that wasn't enough, I Flashed." Said Sam.

"Y-You what?" asks Sarah.

"I Flashed, you see, I'm an Inter-"he began.

"Agent Williams!" shouted Beckman."That is above their clearance!"

"First off General, that's 'Sir' or 'Special Agent' but not just Agent: Second, it's my file, and I will share it with who I want to!" said Sam.

"Yes… sir" said a defeated General Beckman.

"Now where was I?"said Sam," Ahhh, yes I'm an Intersect. Before you ask how, let me tell you, I built one. Yes, Chuck, your dad was technically the only one who could build one, because according to the US Government, I don't exist."

"How is this all possible? I mean, I still don't see why the CIA would want to recruit you." Said Chuck.

"Well, it's probably because I can do this," said Sam, reaching his hand out. To Chuck's surprise, a pen materialized in his hand.

"Whoa!" said Morgan.

Chuck was about to comment on it,when he suddenly flashed. It wasn't a regular 2.0 flash. Instead of being orange, it was a light green, with strange symbols flying through his vision. The flash ended, Chuck pushed his hand out and a tranq pistol appeared in his hand.

"Whoa, Chuck!" exasperated Morgan. Casey and Sarah just stared in awe.

"It worked!" said Sam, with a cocky grin.

"What worked?" piped in the General.

"Oh, right," said Sam, "I forget to mention, Chuck, about the intersect, it-" He was cut off by the sound of an alarm, and the words PERIMETER BREACH, flashing on all the screens.

"Oh crap," said Casey, running to the nearest computer.

"Who is it, the Ring?" asked Sarah.

But before anyone else could answer, Sam spoke,"No, it's something much worse." As soon as he finished saying it, the main door to castle slid open and a a small black container was flung into the room, spewing smoke in all directions. The last thing he said before everyone fainted was this. "Shadow Troopers."

And with that, everything went dark…