The world was in chaos. All of the forces of evil on the planet that united under a single leader. Ultron. He and soldiers had given all of the organizations of evil, HYDRA, AIM, Centipede, Inhumans, all of them, a common cause to fight for. Supreme rulers of Earth.
The only thing that stood in their way were the larger Avengers, which included, along with Iron Man, Captain America, Thor, Hulk, Hawkeye and Black Widow, now also included Iron Patriot, Scarlet Witch, Quicksilver, Sam Wilson, who had taken the alias Falcon with new and improved flight armor and the robotic avenger, the Vision, along with the small group that was now S.H.I.E.L.D. which was led by director Phil Coulson.
"Alright, we're outgunned and outnumbered. But let's end this war." Captain America said.
"Allow me to thin the herd." Agent Skye Johnson said as she activated her energy gauntlet and summoned her inhuman abilities to send out an electrical shortage vibrational spike.
"That's better." Iron man said, since the wave had split the ground open and disabled any flight capabilities that the soldiers had swallowed them into ground.
"Not by much though." Muttered agent Lance Hunter.
"Well then, hit them hard and hit them fast." Coulson said.
"Gladly." Skye said as she charged right into battle.
"I like this one." Thor said as he and Hulk joined Skye in the battle for Earth.
"Tell me about it." Said newly reinstated agent Grant Ward as the rest of them joined the fight.
The battles raged for months. The, what Shield had decided to call them, Alliance of Evil, had taken on greater casualties, that the Avengers and SHIELD were all badly injured from months of fighting. Stark, Rhodes and Wilson's suits were all damaged, Thor had actually returned to Asgard for better medical tech and had promised to return with Asgardian warrior to help fight.
Skye was currently holding her broken arm while limping on her broken leg as she tried to make it back to where the remaining freedom fighters had set up base.
That is until she came across the one man she hated more than anyone. Well except maybe Ward.
"Get out of my way." Skye said to her father.
"It didn't have to be like this." Her dad said.
"Yes it did." Skye said, breathing heavily.
"Fine then. To the death." Her father said.
"Gladly." Skye said as she took him out with a vibrational wave and before he recovered, she killed him with her new repulse blaster.
"You don't deserve the pity of a jail cell." Skye said as she walked pass her father's corpse.
"The war is going badly. If we can take out Ultron for good, then the Alliance will crumble with no one to lead them. To keep them united. The war will be over." Agent Jemma Simmons said.
"Maybe, but how can we even get close. We're all barely still alive and Ultron has the upper hand with superior numbers." Tony Stark asked
"I think I can help with that." Said Thor as he entered the makeshift base.
"Thor, you're back." Captain America said.
"Yes, and I have brought help from Asgard." Thor said as Lady Sif and the Warriors 3 entered the command center.
"The Asgardian armies are ready to aid in the fight. We must stand tall and fight as one." Sif said.
"Alright then. Stark, do whatever you have to in order to get the armors back online. Because tomorrow, the final battle will come. And the forces of good will win. Just like they always have." Steve Rogers said.
"Right." Stark said.
The next day, the Avengers and Shield stood in front of the armies of Asgard, looking at the base of Ultron, which was positioned at the Red Skull's old base in Germany.
"Time to end this war." Agent Melinda May said.
"For Earth." Captain America shouted, raising his shield into the air.
"For Earth." All of their troops shouted as they charged down the field and into the final battles of the war.
The final battle was tough, ending with Skye and Stark facing Ultron.
It ended with Skye hacking into Ultron and eliminating his circuitry the same way you'd eliminate a virus. With an antivirus.
"It's over. We won." Skye said, exhausted.
"That's right, the war is over." Tony said, pulling his helmet off.
"Now we can begin to rebuild. Thankfully, most of humanity survived." Skye said.
"Yeah. SHIELD will be reaccepted, which means you guys can come out of the shadows." Tony agreed.
"Yeah, now to get back to the others." Skye said.
The following months were a blur to Skye. The world bounced back quickly and for a time, it was at peace.
The next thing she knew, she, the other members of SHIELD and the Avengers were standing in front of the White House, where President Ellis was addressing the nation and was personally giving each of them a medal of valor for their services in the war.
"And I would like to say that SHIELD will no longer be considered a terrorist organization, but will once more be our last line of defense in things we don't understand." The president said.
"Thank you sir. And I promise that SHIELD will not be recruiting any evil scientists into its ranks this time and that all people who remain a threat to this planet's peace will be monitored and if need be, neutralized." Coulson said.
"I'm counting on it. I trust you'll keep things well in hand." The president said, shaking Coulson's hand.