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SAM ANDERS (HP) TOM ZAREK (TMR)
Part of the final five they find out young and deprogram themselves when they get their memories from their reincarnation.
Tom goes onto running for the Presidency while Sam goes into sports like canon. Because they are Cylons they don't need as much sleep so they start counterinsurgency Black Ops against the rest of Cylons.
Find the rest of the Final Five deprogram and awaken. They are checking up on the rest of the Cylons making notes of the ones going native. (Sixs and Eights.)
Cover the ops by using Fidelius so no one knows base of operations. Start terraforming the moons to use as Arks for Colonials who are portkeyed up and kept in stasis. By using charity fundraiser as a front to skim the population for the trustworthy to be saved from the majority.
Bring Adama into the know and Cain using Gina whose been deprogrammed to run the old fleet using the cover of being turned into recreation own your own warship deals. All staffed with retired military to run secret ops and prepared to except large numbers on board in case of invasion/evacuation.
Secret expanded space in ships with Fidelius Charm so no one knows. Those in the know sign Blood Oaths.