Hi everybody, first time writing fanfiction, just a heads up that this CONTAINS SPOILERS for Prototype1 but not Prototype2 and is alternate universe because Alex is in high school and around 16-17 years old; Elizabeth Greene is alive and no longer evil, and she appears 13ish (anyone who played Prototype knows she's much older) and Alex has "adopted?" her in a way; also Pariah either doesn't exist, no one cares or knows what happened to him, or maybe I'll have him show up later but at the time I don't plan on it so you will have to give me ideas on how to incorporate him.

So this is after Alex gets blown to bits by the bomb, washes up on shore, regenerates from the crow, and goes to find Greene. Most of the au stuff will be explained sometime but don't get angry if I don't answer everything in the first chapters. Please note that the only time I have been to New York was a connecting flight to England when I was 2, and the only thing I remember is my dad pointing out the twin towers from the airport window before my mom got impatient and made us go to the plane.

P.S. I guess it also has spoilers from Rosario + Vampire in the first 2 seasons, so no, things that are in the manga but not the show are probably not included.

P.P.S. almost forgot the disclaimer: don't own the characters, plot, or settings of these two great works, the people who made them do. My plotline belongs to me, but if it gives you an idea to write your own story then just ask me because I'll most likely say yes. Ideas are MUCH appreciated as this is based solely off an idea I had.

FINALLY!

The day was as normal as could be; although for the two living viruses walking down the side of Manhattan island, normal was a relative term. Alex Mercer looked down at his "sister / Mother / fellow virus / other half / only being like him in existence" as he remembered the past few weeks.

Flashback:

Penn station, the morgue, the infected, Dana, Alex's search for answers, Blackwatch, finding Elizabeth, Karen and her betrayal, Cross, searching again, finding his past, battling Elizabeth, sparing her in exchange for help in the destruction of Blackwatch, the nuke, washing up on shore, and then locating Elizabeth again.

End Flashback

'How fast it all went to Hell and then back again' Alex thought.

"Yes. My infected areas did exemplify some of the human ideas of Hell." Greene cooed in her multi-voice.

"Lizzy," Alex sighed, "what did I tell you about reading my thoughts through the hive mind?" The two had discovered that they could use the hive mind, much easier now that they were the only two alive and using it, to read and communicate through thought.

The seemingly young teenage girl looked down and murmured, "I'm not allowed to unless you know and say it's okay…I'm sorry Father." Alex could do nothing except sigh again; the many ways Elizabeth addressed him were confusing, annoying, and sometimes made him mad at himself. When he tried to tell her to stop calling him so many names, like Father; she said, like always, "But you are all of those and more: Brother, Father, Blacklight, Zeus, and My One"

"I don't have kids Lizzie." Alex replied.

"You adopted me." Elizabeth countered, "Also, you have me, and I am Mother." Alex saw no point in arguing, and Elizabeth did have a good point, though it still bothered him; especially since she was at least 20 years older than him, looked 3 to 4 years younger than him, and it was awkward to have the girl he had "feelings" for call him Father, no matter how fucked up a virus' "feelings" were.

Elizabeth snuggled into his chest as they walked the edge of the sidewalk, the water lapping at the base. They both shared a smile that neither of them would have thought possible just 2 days ago. Alex pulled her even closer to his chest as they continued their stroll.

Alex appeared the same as before the bomb, aside from the tattoos he willed onto his chest and neck, both the biohazard and radioactive symbols on each; seeing as he couldn't get an ink tattoo, he formed them whenever that area of "skin" was exposed in the same way he did clothing. Elizabeth however, had drastic improvements: the blood had been wiped from her face and body, also revealing her hair to be more of a blonde with reddish tint; Alex had convinced her to lengthen her newfound hair, which now ran to her shoulders and covered anything that a shirt wouldn't the exception being the front of her suit's collar, which they agreed to call a prototype voice box for the mute; Alex also found that they couldn't permanently remove her suit, although she could call it into her body for a time, and so he had gone out and purchased a hooded jacket to cover the top of the suit and some baggy pants for good measure.

Just as they got really comfortable against each other, the two were quite rudely interrupted by the ringing of a nearby phone booth. There was no one else around so Alex approached, leaving Elizabeth across the street as he was still wary of phone booths, and noticed the sound was coming from BENEATH the phone. Immediately putting on his armor and telling Lizzie to hide, Alex reached down and pulled lose the cellphone.

"Hello," an eerie voice spoke on the other side, "I was wondering if you would be interested in a proposition…"

"Who are you, how do you know me, and what do you really want?" Alex interrupted the man. "Be quick, before you make an enemy out of me."

"Haha, I should have guessed you'd react like this. Either way, I am the chairman of a school, a special school that I would like for you and Elizabeth to attend…" Alex essentially lost it and was looking franticly as he sent out pulses to find out where the man on the other side was. "It's no use; I'm on the other side of the world right now."

"How do you know about us?" Alex gritted out.

"With the academy I run, I make it my business to know about all of the non-humans on earth… though for Elizabeth and yourself, it was a rather special case." the eerie chairman explained. "You see, I run a school for monsters, the kind straight out of legend. I would strongly urge you two to attend, as we are protected from the outside world, and you could have a place to stay."

"I guess that explains what's in it for me… how will we get to your school if you're across the world?" Alex asked.

"A bus will be arriving shortly…" the line then went dead.

In the minute it took Alex and Elizabeth to reach each other, he had explained everything to her through the Hive Mind and the bus had arrived. "That was fast." Elizabeth said, Alex remaining in his armor.

The driver opened the doors and let them on, "You won't be needing that armor, boy, not yet…"

Next Stop: Yokai Academy

I don't know if I will include all of the R+V girls, but I definitely will include Moka and Mizore; I will not be using the things-on-the-end-of-the-name (I don't remember what they're called) because it's a pain in the ass and I know I'll forget, so I'm not gonna even try.

At some point, when I figure out the poll thing, I might use that; but for now just tell me which girls you want in or out of the story, except for the ones I've already told you about.

What category should I use? I can't decide.

Oh and does anyone know how to do the Chairman and Bus Driver's voices in letters, like is it bold, italic, underlined, or what combination of the three? I am going to have Inner Moka=bold, Elizabeth=italics, and I think I'll have the bus driver be bold italics but I'm not sure.

PLEASE REVIEW! No matter how long it has been since an update I will check all reviews. The reviews, suggestions, and ideas are what fuel my writing! It may be weeks before I post a new chapter but every review, PM, of other form of communication makes the writing a lot easier and faster. Although constructive criticism is appreciated, don't ramble on about how I made the same grammar mistake over and over, just tell me once and give an example; I get enough nagging about my grammar from my professors.