A/N: Hi people, im preety new to MGS having only just completed Sons Of Liberty, so I probally won't include Liquid Snake or Ocelot, but this story will still have two very bad-bad guys, oh, and a Ninja!

Codec will be like this, normal radio transmition will be in CAPITALS

Metal Gear Solid 3

Chapter 1

Snake and Raiden stepped out of the Philanthropy Headquarters and straight into the awaiting van. They were greeted by a tall-ish, brown haired man. He wore black glasses, and sitting upon his left shoulder was a small, green parrot.

"Otacon," Raiden nodded.

"Raiden, Snake," Otacon said,"How's it going?"

"Fine," Snake replied.

"Ditto," Raiden said," So, what's our mission?"

"You are to infiltrate a Military Base, which is located fifty miles away from Moscow. We have reason to believe that there is a new model of Metal Gear, we are not sure of it's name or any other information regarding weapons, diameters or technology," Otacon explained," You will be driven ten miles away, and how you get the rest of the way is up to you."

"What about enemies?" Snake asked.

"We're in Russia, what do you expect?" Otacon asked.

"French? German? Oh, oh! I know, Spanish!" Raiden said in mock excitement.

"Ha, ha," Otacon said sarcastically," You will be equiped with some rations, Thermo-Googles, a Scope and a M9 tranquiliser gun. Some guards will carry guns or equipment you can use, but only some guns you will be able to use. If you get what I mean."

"Right," Snake said," When do we leave?"

"Tomorrow morning," Otacon answered.

The Russian soldier held up his AK-74u, and pointed it at the strange looking man. He had a high-tech suit on, and across his back was a sword.

"Who goes there?" The soldier ordered.

"Mr.X," The other said, and with a blink of an eye, he drew his sword and slit the soliders throat. He bent down to talk in his Codec.

This is Bio, I have boarded the Colnel's private jet and am ready to fly.

Good work, Codec me when you have reached the airport. And remember, we may have company.

Affirmative.

Raiden couldn't sleep that night, he was too anxious about the mission the next day. He had stayed up half the night, packing his things. Even though he would be issued with a M9, he still wanted to take his Socom along. Suddenly the telephone rang, Raiden got out of bed and went to answer it.

"Hello?" Raiden said.

"Raiden?" A voice said," This is Snake, we have a problem, Otacon is gone!"

"What do you mean, 'gone'?" Raiden asked.

"He's just dissapered," Snake replied," His computer and that parrot are also gone."

"I'll be right over," Raiden said.

"No, don't," Snake said quickly," Try and get some sleep, we've got a big day tommorow."

"Alright," Raiden said," Night."

"Night," Snake replied, and hung up. Raiden put down the reciever and walked back to his bed.

Twelve hours later, Raiden and Snake boarded the plane that would take them to Moscow.

"Any luck on finding Otacon?" Raiden asked.

"No," Snake replied," He's not at his house either. But there was a note by the telephone, as though he wrote something down to remember." Snake handed Raiden the note. Across it, in bold letters was the word 'Bio'.

"What could this mean?" Raiden asked.

"No idea," Snake said,"Anyway, let's try and focus on the mission. Get any sleep last night?"

"No."

"Nope, neither did I," Snake said.

"I'm worried," Raiden muttered," This is only my second big-scale operation."

"Don't worry kid," Snake said, placing a reasurring hand on Raiden's shoulder," You'll be fine, and remember, you've got the ledgenary Solid Snake to help you!"

"I feel so much better!" Raiden said sarcastically, " I couldn't find my High Frequency..." Raiden trailed off when he saw that Snake was holding the Blade out. Raiden took it from him and placed it in it's sheath on his back.

"Where'd you get it?" Raiden asked.

"I found it laying about in my flat," Snake said," I suppose you left it when you and Rose had that argument." Riaden nodded in agreement.

A couple of years back, after Raiden got back from the Big Shell mission, Rose went balistic. She went on about how scared she was and how ever time she heard a gun shot, she wondered 'Was that Jack?" So she left home, but between Raiden and Snake, they thought she was probally jealous of E.E, or Emma Emmerich, Otacon's younger sister. Raiden had had to help her out, and he instructed E.E to 'place her head on his chest and listen to his heartbeat' and obviously, Rose had taken it the wrong way.

"THIS IS YOU CAPTAIN SPEAKING." The tannoy announcement interrupted Raiden's thoughts. "WE ARE ABOUT TO LAND, SO PLEASE FASTEN SAFETY BELTS AND GET READY. THANK YOU" Raiden and Snake did so, and in the space of ten minutes, the plane landed with a slight 'bump'.

As they waited for their luggage, they heard a shout coming from the shop section. It looked like someone had dropped a smoke-grenade. Suddenly, they saw a black silhouete walking slowly out of the smoke. As it came into view, Raiden was able to make out the Ninja outfit and the Sword. Snake pulled out his Usp, so Raiden wasn't the only one who thought of bringing a proper gun, and shot some rounds at the Ninja. As Raiden expected, the Ninja easily deflected them with it's Sword. As it advanced, Raiden pulled out his own Blade, and walked slowly towards the Ninja.

"Who are you?" He asked.

"Mr.X," the Ninja replied.

"Mr.X?" Raiden asked," You can't be, I saw 'Mr.X' die."

"So there's two of us," Mr.X said," What's wrong with that?" As quick as lightning, the Ninja lunged with his Sword, but Raiden was quicker. He side-stepped the lunge, and cut the Ninja's arm. There was a grunt of pain, and Mr.X rounded on him again.

"You will pay for that!" He threw what looked like a shiny CD. It emitted smoke, and for several minutes there was a dense fog around the airport lobby. When it finally cleared, Mr.X was gone, but in his place was a note. Raiden walked back over to Snake and read the note. In a wierd, scibbly writing were the words, Bio-Hazard.

"Bio?" Snake asked," There mst be a connection."

"Maybe Otacon is the Ninja," Raiden said.

"Otacon...a Ninja?" Snake tried to keep it in, but the laughter escaped him," Otacon couldn't be a Ninja if he tried, he doesn't know how to use a gun, let alone a Sword."

"I do actually," A voice said. Snake and Raiden turned to find Otacon, pointing an M4 at them.

Did you like it? As I said above, I am new to the world of Metal Gear Solid, so be nice!