As the Clone Wars drew to a close, Jedi Knight, Anakin Skywalker heard he was going to be a father, but also had troubling dreams about the possible death of his secret wife, Senator Padme Amidala of Naboo. Afterwords, he was appointed by Supreme Chancellor Palpatine to be his personal representative on the Jedi Council. When Anakin told the council of this, they were disturbed and disagreed. They elected their own members, and despite the mistrust of Count Dooku, they remembered that he warned them that the senate may be controlled by a Sith lord. However, they decided to approve the appointment so that Anakin could constantly tell them what the chancellor is up to.

As Anakin kept on talking with Palpatine, he flash backed to all of the suspicious things he told him and realized he was the hidden Sith Lord the Jedi have been looking for. He also realized that he was trying to tempt him to the dark side, including those nightmares he'd had about Padme. So he called Mace Windu via holo and told him what had happened. Later, Mace and 3 other Jedi knights came for Palpatine, he attacked, but they managed to beat him (not by just wacking at him with lightsabers though).

Once Palpatine fell, Anakin's mind felt at ease, the visions of Padme's death vanished. That's when he realized Palpatine caused them to lure him towards the dark side. Anakin searched Palpatine's computers and found a dreadful sight, plans for a massive battle station capable of destroying entire planets. To make sure they never became real, Anakin destroyed the blueprints. However, Representative Jar Jar Binks came and revealed that he was also a secret Sith Lord. He'd been using his 'clumsy and simple-minded Gungun' act to gain the trust of politicians and Jedi alike. With the force, Jar Jar created a gust of wind that shattered the window and leaped out onto the rooftops of Coruscant.

Anakin and the rest of the council immediately contacted Jedi across the galaxy, telling them about Palpatine and Jar Jar. Meanwhile, the Kaminoan cloners made a startling discovery about the clones inhibitor chips: In them was a pre-programmed or to kill the Jedi upon hearing the words; "Execute Order 66". They reported this to the senate and Jedi and both saw to it the clones were thoroughly checked and the chips were removed and destroyed.

Meanwhile, Ahsoka Tano, padawan of Anakin Skywalker (who in this timeline didn't leave the order), chased after Jar Jar alongside her master. Together, they put up a challenging duel with Jar Jar and defeated him.

A few years later, Anakin tells the story of Clone Wars and their end to his and Padme's 2 children; Luke and Leia. He explained that after the war; the senate voted in a new chancellor, the clones stood ready to defend the Republic again, and the Jedi Order continues to thrive as Anakin, Padme, and their children live on Naboo.

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