AN: Hello, I am known as Procrazedfan and I will be your fan fiction author for the course of the story. Before I can begin I must give credit where credit is due and thank my awesome beta,DarkenedSakura, for reading all my useless crap and helping it transform into a story.
Please note that while I am aware this is a crossover fic it will not contain romance, Mary Sues, and any other crap that normally goes into your atypical crossover fic.

Chamber 00

Pain was the first thing that registered for Motoko Kusanagi as she woke up to a blinding white light
As soon as her system was able to adjust to the lighting, her eyes began to open fully to a light
gray ceiling, and a light bulb that was hanging from the ceiling toward her face.

Whatever this place was, this was definitely not where she normally slept. She gripped the sides of the "bed" and sat up turning slowly, so that her feet were able to touch the ground.

Looking to her left she noticed a section of the wall that was made of a cement-like material with a timer above it that stayed at a stagnant 00:05:00:00.

She then looked to her right and noticed a white end table with a coffee cup and a small radio. Immediately, Motoko gathered her thoughts together to try and communicate with one of her comrades.

"Batou? Can you hear me?"

"Loud and clear, Major, what's the report?" a gruff voice inside her
head replied.

"There's nothing we can do now on this end until we can get a signal on
your location."

" There was a strong electrical interference at my original destination that caused a few of my systems to shut down for about 15 minutes or so. I don't like this one bit, Batou."

Oddly enough her thoughts were interrupted by an electronic blip and the sound of... samba? Where the hell was that music coming from? She turned her head to the source of that irritating noise and looked at the annoying piece of technology that sat on the white desk. Out of pure loathing she smashed the "off-button" that was located at the top of the radio.

" Hello, and again welcome to the Aperture Science Computer Aided
Enrichment Center."

Motoko searched the room to try and find where the feminine artificial-sounding voice was coming from. Her search didn't last very long ,however, as she noticed the timer above the cement wall that was now at 00:04:53.52 and still counting down.

"We hope your brief detention in the relaxation vault has been a
pleasant one."
So she was a prisoner, in spite of the almost too-apparent isolation. There
had to be a reason why she was here. It almost seemed like...

"The specimen has been processed, and we are now able to begin the
test proper.".

So she was a participant in some twisted laboratory game.

"Before we can start, however, keep in mind that although fun and learning
are the primary goals of all Enrichment Center activities, serious injury may occur. For your own safety, and the safety of others please refrain from the-"

An extremely harsh static noise erupted in the room, followed by high-pitched
electronic squeals and what sounded almost like back masking.

If there was any sort of higher power or luck on her side at all then chances were the test
proctor was only a prerecorded electronic voice that just crashed,not anything else.

However any shred of hope was dashed when the static noise ceased to and she heard two dreaded words that would ultimately prove that the program was at least an A.I.

"I'm back."

AN: Insert evil cliffhanger here Muahahaha. This is merely a prologue so it will get longer as the story progresses.