Disclaimer: I'm only going to say this once so pay attention, I don't own Zoids or their characters. (except the characters I made up!)
Setting: This story takes place after Guardian Force (maybe a year or so after Van and Raven triumphed over the death saurer yet again). This is a story about the Organoids.
Apology/Warnings/etc: I'm sorry if I get details wrong and I may have to bend the truth in a few places to make my story work. There will be a few original characters, but they will likely have minor parts.
Also, to be confusing during my story I'm going to switch between first person and third person so you understand better the characters. I'm also sorry if I get a few of the characters personalities wrong. This will be either a mistake or deliberate so the story works.
There might be very mild shounen-ai in this story, but I haven't entirely decided.
Also... umm, I'm writing this as I go, I have no real plot as such so any suggestions on an ultimate end of the story would rock. Thanks!
Note: Ok this story is being re-posted under a different username. Its been edited a little because of a few inconsistencies.

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Lucifel: So I'm back! and with renewed enthusiasm to write this fic. Allow me to introduce my Muse, Ambient!
Ambient: (rolls eyes) Oh look, its been over a year since you started this fic, and you expect me to still be you muse?
Lucifel: Yes actually.
Ambient: oh well, alright then. (plays with his red hair) .................

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Chapter 1
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"We have been monitoring it ever since the incident with Hiltz, and for the past two months the energy readings have slowly been getting stronger"
"Do you think the Zoid Eve may be trying to re-emerge?" asked Van sceptically
"Well we don't know, that why we want you and the Blade Liger to take a look. Understand, this is a reconnaissance mission only. Try not to disturb anything while you are there."
"Not a problem" smiled Van. He hadn't had a proper mission in ages and he was looking forward to some potential 'action'. The lieutenant looked at Van with mock distrust.
"Come on, your Zoid awaits" he said walking briskly out of the room.
Van was escorted out and down to the docking bay where Zeke and the Blade Liger were waiting. Van looked up at the Blade Liger, it looked different, sparkling, new, but possibly slightly drowsy. Zeke purred reassuringly.
"Lets go!" said Van zealously as he climbed into the Blade Liger. "Zeke, mobilize". Zeke promptly boosted into the Blade Liger and wrapped himself snugly around its core. The Blade Liger trembled with a wave of energy. As the bay doors were opened the red and pink rays of the setting sun penetrated the window on the Blade Liger illuminating the controls for Van.
The communication channel was opened and the image of the lieutenant appeared on the screen.
"I have a message from Fiona here, it says for you to be careful. I'm inclined to agree, we still don't really know what we are dealing with here. Just one sign of trouble and you withdraw out of there."
Van merely smiled, poked out his tongue and cut off the communication channel. He was going to receive hell for that when he got back.
"We have been up against far more dangerous things than some 'strange energy readings' before!" he muttered. He heard an agreeing growl from Zeke echo around him.
The Blade Liger broke into a sprint out of the bay doors, stretching its limbs and loosening its joints. As the Blade Liger ran faster, the scenery around them seemed to blur into shadowed colours. The sun had almost set.
There, in the distance, a blue glow, the Zoid Eve. Unchanged since the battle that had occurred there a year before. The Blade Liger slowed.
"Hey, we have a job to do." whispered Van to his Zoid. "We won't be here long, I promise."
The Blade Liger listened and obeyed, increasing its speed once again.
The blue glow slowly became larger. The ruins appeared sinister, as though they were watching these intruders. The Blade Liger slowed down considerably and began to tread as softly as possible for a machine of its size. Zeke fidgeted nervously, something didn't feel right. He growled his feelings to Van.
Then, without warning, the blue glow being emitted from the Zoid Eve suddenly became more intense. The ground beneath the Blade Liger's feet began to shake. The glow suddenly darkened into a deep purple. Van decided that this was his cue to leave and the Blade Liger started to back slowly away from the Zoid Eve.
There was an amazing array of green light as the purple glow from the Zoid Eve exploded. The entire sky was showered with green and purple threads, like miniature bolts of lightning, raining down. The sky was thick with the threads, as though they were swimming through the atmosphere. The Blade Liger began to move more quickly from the area but the threads were everywhere. They all then fell. The threads passed through rocks and trees as though they were not there. Descending on the Blade Liger the threads passed right through the protective window around Van, and then right through him!
Van was momentarily amazed by these threads before being jerked back to reality as the Blade Liger convulsed violently. Crashing painfully to the ground the Blade Liger spasms intensified. Van could feel the Blade Liger silently scream in agony, a pain shared between the Blade Liger and Zeke. The threads, though passing harmlessly through all other things seemed magnetized to Zeke. Zeke boosted from the Blade Liger's core onto the ground. The Blade Liger became still, laying exhausted on the ground. Zeke, covered in threads attempted to stand, the pain was unimaginable. The threads solidified around Zeke and curled around objects around him, crushing him to the ground. Van scrambled out of the Blade Liger and ran to Zeke.
"Zeke! Try to stand, I'm going to get you out!" Van reached out to pull away some of the threads. Searing heat caused him to recoil quickly, a red bleeding burn flashed across his hand.
More threads wrapped themselves around Zeke, completely covering him. The sky had begun to clear, the thread were heading off in different directions, swimming through the air.
"…….an……V..n…..Van….can you hear me?…….going on?…. can you see the sky?……." a voice can from the Blade Liger. Van, now unable to see any part of Zeke ran back to the Blade Liger.
"Yes, lieutenant, I can hear you. Something has happened to Zeke! It's the threads, they have trapped him in a cocoon!" Van was beginning to panic, he didn't know how to help Zeke.
"Listen to me Van. You need to get out of there, come back to the base, we will return for Zeke. I promise we will, but we can't risk keeping you there!"
"I'm not leaving Zeke like this!" shouted Van angrily, knowing that there was nothing he could do.
"Van I order you to return with the Blade Liger to the base, NOW." The lieutenant yelled back.
Van cast a regretful look at the imprisoned Zeke and obeyed. The Blade Liger dragged itself up from the ground and ran, as fast as it could away from the area.

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It is a clear night. I thought to myself. I glanced over to a large twisted tree. She is sleeping, her blue armour glinting in the moonlight. So lazy.
I stretch my black wings out. They said they would be back 'soon'. They're late.
What is that?
Did you see that? I call out. She growls quietly,
"see what?"
Specular, look up at the sky! What is that?
The sky seemed to be filling with purple and green threads, made out of light.
"I have never seen anything like it! They are not back yet are they?" she looks completely awake now.
No they're not back.
The threads seem to be getting closer. I'm actually worried about them. I know they are not normal. They engulf the tree 8 metres away. They pass through it as though it didn't even exist. I get up and back away from them, so does she. I turn around. The threads are there too.
"look, they passed through the tree, I'm going to see…" she walks up to the threads.
Don't……
She lets out a scream as the threads land on her body. I move to help her. But a searing pain shoots over my spine. The threads are there, they are all around. They are sticking to me. They hurt. The pain shoots right down to my toes, my eyes are burning. I can't stand up, they are too heavy. She is not moving anymore, I can barely see her.
"SHADOW!"
Its him! They are here, they are back, he can fix it! Make the pain go away, make it stop, please make it stop. I can't move.
"shadow, what's happening….."
NO don't touch me! It will damage you!
I call out. But I made no sound. An inky black liquid runs down my cheek and drips on the floor. Organoids can't cry. He looks horrified and calls out to me…… its going dark, I can't see him, I can't hear him……..nothing…………I'm going to die.
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Lucifel: well what do you think? should I continue? Please review with your thoughts, it would be a huge help (doe eyes)
Ambient: (cackles) is Shadow dead yet?
Lucifel: I'm not telling. You will find out in the next chapter.
Ambient: (pouts)