Later on the body of Ai Haibara was found shot 4869 times and beaten. When detective Mori arrived with Conan and Ran they could barely stay conscious.
"I let this happen… I wasn't fast enough"
"w-what did that mean Conan? Is that what you were yelling in the restroom?"
"She was kidnapped by an organization and murdered."
"Why didn't you tell me that your friend was kidnapped?"
"Go to the construction site near Shinichi's in two nights to hear."
--
2 nights later Ran followed the sad looking Conan to the site and sat in front of him like he asked.
"Ran"
"Yes"
"I am so sorry"
"For what?"
"For lying everyday for 2 years"
"Huh?"
"Remember Tropical Land?"
"Yeah when Shinichi disappeared"
"He was with you everyday Ran"
"Wait…"
"I am Shinichi"
"WHAT!!"
"Yes and I have been lying to protect the one I love… you Ran."
"Sh- Shinichi why did you have to protect me?"
"Because the Black Organization wanted me dead when they poisoned my in Tropical Land, but I changed into a child instead."
"So they will kill anyone who knows?"
"Yes"
"Oh"
"Ran they know my name! If I stay this way any longer I will be a test subject to!"
"So why are we at a construction site?"
"So you could see me one last time"
"W-why?"
"Ai found me an antidote that would work forever, but if I change back they will find me easier."
"So are you going to take it?"
"yes"
Conan takes the antidote and after some "growing pains" he is teenage Shinichi Kudo. He then pulls out a gun, it has 2 bullets in it.
"Ran use at least one of these bullets on my face. To put me through your pain."
"Sh-Shinichi…"
"The other must be used on one of 3 things, me, you, or the Black leader.
"no"
"what?"
"NO!"
"RAN!!"
AAAAH! BANG!!
"Sh-Shinichi!!"
Just like that the mini detective, the silver bullet of the organization's life ends before Mori Ran's eyes. He left 2 things, love and a note, stating,
Sorry for the trouble I caused as Conan,
I was protecting everyone I knew.
I never meant to hurt anyone
Detective Boys I hope you stay interested in detectives.
Goodbye,
Kudo Shinichi
The next choice was for Ran, what should she do?