Wow great feedback from the first chapter! Thank you to all of the readers who viewed my stories, and a special thanks to the followers and people who Favorited it! You guys really helped me make this chapter, so thank you very much! Anyway here as promised, chapter two, hope you like it!

Training with the two Uchiha's was, for lack of better words, torture. He'd been learning from them for less than a month and he was beginning to regret awakening the sharingan. Within the first training session it started off interesting. They taught him how to channel chakra to his eyes to switch his sharingan on and off, and even checked his affinity by channelling chakra into special chakra paper. It had three separate reactions, first it split in two pieces indicating a wind chakra nature, but then one side burnt to ash while the other crumbled up into a ball.

According to his sensei's, this meant that Naruto had not one, not two even, but three chakra natures. They were wind, fire, and lightning. Then it got to the torture. Itachi made him wear weights on his arms and legs, making the poor child unable to move, and told Naruto he was to wear them everywhere and never take them off, before ordering him to run laps around the entire training ground, then push-ups, and then punches and kicks.

He almost passed out the first day. Shisui made Naruto spar with him for 30 minutes each day, and he was not holding back. He made Naruto activate his sharingan and told him to focus and predict his movements and attacks; needless to say Naruto went home with a lot of bruises. He was also given a wooden sword to train with, teaching him the basics, and correcting him strictly whenever he made the slightest mistakes.

Itachi was also drilling knowledge into the boys head, and information and intellect was just as useful as jutsu, if not more so. Then they told him to meditate for three hours a day after training, to help build chakra reserves and give him some chakra control. After the first two weeks he felt stronger, and was beginning to get used to his weights.

He had also been attending the academy and had not missed a single day, Iruka was sure someone was pretending to be Naruto as he had been working a lot harder in classes. It was true he'd been paying more attention, mostly because Itachi would be mad if he found out, and he scared Naruto. Surprisingly Naruto had actually made two new friends.

The first was a boy slightly taller than him with light blue hair and bright purple eyes. He had strange shark-like teeth and liked to wear sleeveless shirts for some reason. He was originally from the mist village but his family were seeking refuge from the civil war back home, and the Hokage gracefully took them in. His name was Shinsuke Hozuki, and he was the first to make friends with Naruto. Being from the mist village people didn't trust his family, and therefore didn't trust him. He related to Naruto, and decided to befriend the boy.

Not long after Shinsuke and Naruto became friends, another boy approached them. He had short black hair, and the typical white eyes of a Hyuuga. He had a strange green seal on his forehead, but refused to cover it as "Covering it would mean I'm even more caged than I already am" WHEN Naruto asked. He was a little shorter than the other two. He had made friends with them as he disliked the other members of their class, as they were too loud. His name was Tokiro Hyuuga

Naruto was happy he now had friends to hang out with and play with. They didn't judge him like everyone else, and didn't seem to care that all the glares began to turn to them too for being the demon's friends. The three boys would often hang out in empty training grounds, or at the Hokage monument. They would often talk about their dreams and goals as future shinobi.

Shinsuke wished to be as skilled as the seven ninja swordsmen back at the mist village, and hopefully see an end to all the fighting back home. You could see the determination in his eyes. As a side dream he would like to wield one of their blades. Tokiro wished to free the branch family of the Hyuuga from the seal that is implanted on all of their foreheads from a young age, which is used by the main family to inflict immense pain upon the branch family members should they step out of line. Naruto had told them that he would like to be strong enough to fight on par with a kage, and change what people think of him, and he would like to master the sharingan to just see the reactions people will have when they find out he has Uchiha blood.

The boys kept no secrets from each other, and were closer than most brothers were. Hiruzen was proud of how much Naruto had progressed, and it warmed his heart to see him with friends his own age. He was at the top of his classes now, and Hiruzen knew that the boy had a lot of potential.

Naruto walked into his usual training ground to see his two sensei's there waiting for him. No words had to be spoken as Naruto immediately got to work on his laps, while Shisui and Itachi spoke together. "He has progressed so well in just a month, and he still has four years before graduating the academy. By then we'll have created an almost perfect shinobi, he has skill, power, and knowledge. Qualities like those are hard to come by these days, even among most chunin." Shisui said, praising their student with a small smile.

Itachi merely nodded while watching Naruto. The boy had gained a lot of speed in such a short amount of time, if he were to remove his weights he could definitely keep up with almost any chunin and maybe even some jounin, it was surprising to say the least. He had gotten better with the sharingan too, and could actually follow Shisui's movements to a certain degree. Naruto was just finishing his laps and was about to start on press-ups when Itachi spoke up.

"Naruto, you are somehow able to use the sharingan, which means somewhere in you there's Uchiha blood. Activate it for me and watch closely, I am about to teach you the hand signs for a jutsu that all members of our clan learn." Naruto nodded, while flaring his sharingan to life. Itachi did them at a fast pace but Naruto was able to follow the hand signs with little difficulty. "Focus your chakra into your lungs, and heat it up. When you think you have it right, exhale. Like this. Fire Style: Fireball Jutsu!" From Itachi's mouth burst a large flaming fireball, like a miniature sun, flowing forward and incinerating a nearby training dummy.

Naruto's eyes twinkled slightly at the sight. With a nod of approval from Itachi, Naruto began going through the hand signs. Itachi and Shisui were both shocked at the speed Naruto was going through them at, it was unheard of for an academy students first try, but he made no mistakes. Taking a deep breath Naruto aimed at a dummy next to the first. "Here goes! Fire Style: Fireball Jutsu!" from Naruto's mouth erupted a huge fireball, close to the size of Itachi's, burning towards the dummy with extraordinary speed. It burnt the wooden mannequin to ash, like Itachi's did to the first one.

Looking up Naruto saw both of his sensei's with wide eyed looks. He grinned sheepishly, while rubbing the back of his head. "Well done Naruto, first try as well. Looks like we have another Uchiha prodigy over here!" Shisui said enthusiastically while patting his students head. He was proud of the young boy, and deep down he knew that Itachi was too even if he was remaining emotionless. "For your good work I'm going to teach you one more new jutsu. Watch closely with your sharingan again. Shadow Clone Jutsu!"

In a puff of smoke appeared two more copies of Shisui. "This jutsu allows you to create physical clones of yourself, but that isn't the only trick. When you dispel a clone, the memories of that clone are transferred back to you. Making it the excellent training jutsu for someone with high reserves. Now you try."

Naruto was grinning, he was learning another jutsu. Holding up the single hand sign he focused his chakra. "Shadow Clone Jutsu!" A huge amount of smoke filled the training ground, blinding everyone there temporarily. When the smoke cleared, both Uchiha's almost had a heart attack. Naruto had summoned over a hundred clones! They were all perfect, no slight or major deformities among them.

"Okay Naruto! Back to training! Split into four groups, and each group will focus on one of your training exercises, be it press-ups, punches and kicks, sparring, or chakra control. Get to it!" Shisui commanded. Each Naruto saluted to him before replying in complete unison. "Yes Shisui-sensei!" and getting to work.

Itachi whispered to Shisui quietly. "This boy has the potential to surpass even us. He masters jutsu first time, progresses faster than any regular shinobi his age or far older. I can't wait to see the ninja he becomes after graduation." He had a small smile on his face. Not that he'd admit it but he liked training Naruto, the boy was a breath of fresh air.

(Two years later)

Naruto had grown, not just physically. His intelligence was close to a Nara's. He now had a fully matured sharingan in both eyes, something he was proud of. His senseis had called off training for the day so he was lost for things to do. His chakra control had come a long way, despite not being a sensory ninja, he could rather easily spot out most shinobi when they were hiding. With the use of shadow clones, his training skyrocketed. He had practically mastered the use of his sword, and Shisui had actually gifted him a real Katana.

He was above chunin level in terms of speed, and that was without removing his weights. He had a large arsenal of jutsu under his belt too. Shisui and Itachi took advantage of his skill at mastering jutsu, and he had been taught practically every fire jutsu in the village, and Uchiha, jutsu libraries. He learned to channel chakra through his blade too, increasing its damage. He had some new lightning and wind jutsu to go along with his fire ones, and it was safe to say he was the most dangerous ten year old in the village.

Shisui had even taught him his all famous variation of the Shunshin teleportation jutsu, which he had practically mastered in a little over a week. Itachi had been teaching him strong Genjutsu, and had already taught the boy to break them with the use of his chakra. Naruto could now cast them with his sharingan alone. Itachi also allowed him to sign the crow summoning contract, as it would be a useful tool in the future.

His aim with throwing weapons at first was awful, he had almost impaled Itachi once, and he was standing far behind the boy. It quickly improved to the point he was the top of his class at that as well. He even added his chakra natures to his kunai and shuriken for added speed and damage.

They taught him the Uchiha Taijutsu style, the interceptor fist, as they didn't want the boy to be killed the first time he drops his sword. Surprisingly he managed to work the shadow clones around him into taijutsu combinations, acting as a team on his own. He even incorporated genjutsu whenever he made eye-contact with his opponent, like a true Uchiha. The Hokage was impressed with Naruto's skill, but was sad to see something change in the boy.

He became more serious, and was never happy until he was training. He lost the goofy attitude, and the large grins. The most he'd do was a small arrogant Uchiha-like smirk. That was enough thinking about Naruto, he had something else he had to deal with. For a long time now the Uchiha and the people of Konoha had began to drift apart. Trust between the two had disappeared completely.

This started when Tobirama, through his paranoia towards the Uchiha, forced them to live on the outskirts and stripped them of power, rendering them to nothing but a simple police force. Hiruzen had begun making progress by trying to mend their differences, in hopes of keeping their alliance, but that all ended when the Kyuubi attacked the village.

Villagers and shinobi alike had claimed that they saw a sharingan in the foxes eye, and of course the Uchiha didn't take kindly to this accusation. Itachi and Shisui had informed him of something that made him sad however. The clan was planning a coup d'état on the village. Planning to kill everyone standing in their way and take the seat of Hokage by force. Naruto's two sensei's had been working as spies for the Hokage and they had told him the attack would be soon.

He had been hoping to avoid confrontation and had planned for Shisui to hopefully change their minds. See Shisui had awakened the next form of the Sharingan, the Mangekyo Sharingan, and with it came a powerful genjutsu. This genjutsu could implant false memories into ones head without them ever realising, he called it Kotoamatsukami. One of his advisors, Danzou, had disapproved immediately, the snake. He was just trying to take the seat for himself, and Hiruzen knew it.

The crippled man had told Hiruzen that they needed to deal with traitors with force, recommending that they wipe the entire clan out. Hiruzen had said that should his plan fail they would have no other choice but to go along with that plan, but had hoped it wouldn't come to it.

Today was the day; he had Shisui in front of him with his sharingan activated, ready for his mission. He would meet Itachi at a secret rendezvous should something go wrong, but he had confidence in himself. "Shisui, you know what's at stake. Should you fail I will have no other choice but to annihilate the Uchiha clan. I trust you. Go!" In a swirl of leaves the shinobi vanished, and began making the trip to his clan.

Suddenly he saw someone stood in the way staring at him with a single eye. He knew this man, and he didn't trust him. "Danzou. What can I do for you? I really should get moving." The man just looked at him with his cold, single eye.

"Shisui Uchiha. Your sharingan is powerful, even more so than Itachi's. You will be using your famed Kotoamatsukami on Fugaku, yes?" Shisui was on edge, something didn't feel right here. He began walking passed Danzou. The crippled man suddenly reached for his face, making Shisui widen his eyes in shock. Danzou was close to reaching for his eye, when Shisui made eye-contact. Danzou suddenly froze, unable to move a muscle.

"That genjutsu will only be temporary, when you finally break out I should be long go-" Danzou suddenly vanished from existence, putting Shisui on edge. He felt a strong grip on his throat suddenly, looking forward he could see that the hand belonged to Danzou. However before he could react, the crippled man ripped out his left eyes, causing the young uchiha to scream in pain.

The bandages around the man's face suddenly fell as he pushed the sharingan eye in place. Shisui created some distance quickly, but surrounding Danzou was a large group of his root Anbu. They immediately fired off dozens of water jutsu. Responding quickly, Shisui flashed through hand signs, and stopped each of the oncoming jutsu with a single fireball.

The jutsu clash kicked up a large cloud of steam, and when it vanished Shisui was nowhere to be seen. "Follow him! Don't let him escape!" The root Anbu disappeared, following the young Uchiha. When the caught up to him he was in a clearing and facing them head on. His good eye suddenly bled, as his chakra flared drastically. The root didn't seem to notice as they closed the gap, and that was their last mistake.

"Susanoo!" A large green body of chakra appeared around Shisui. It had a knight like helmet and looked to be armoured. It was wielding a large drill like weapon, which it swung, slicing all of the root members to pieces in one go. The chakra body suddenly disappeared as Shisui dropped to one knee, before he vanished in a blur.

Itachi was already waiting at their meeting place, he figured something must have happened as Shisui was late and in the end never arrived at the Uchiha clan district. He felt someone behind him and turned to look at his best friend. His eyes suddenly widened as he saw Shisui missing an eye, and bleeding heavily. "Shisui! What happened!" he ran to his friend's side to see if there was anything he could do to help. "Your sharingan!"

"Danzou took it... he doesn't trust me, and wants to...*cough* He wants something from our clan... I don't know what... Don't trust him Itachi... he has spies everywhere..." Shisui was panting heavily, and could barely get those words out. He then reached to his face, removing his last eye. "Take this Itachi... you are the only one I trust... the fate of our clan is in your hands..." A crow appeared out of nowhere and took the eye, bring it to its homeland so it could be safe.

Itachi looked worried, as if he was holding back tears. Shisui smiled at him while standing up. He began walking backwards slowly, and by the time Itachi realised what he was doing it was too late. Shisui fell backwards off of the Cliffside, and Itachi ran to catch him but was too late. "Shisui!" He called as he watched his best friend fall to his death. All the pain he felt, and the anger towards Danzou, it sparked something in him.

His eyes began to burn as chakra began flowing to them in large amounts. His sharingan began to morph into something new. It began to look like a three-sided shuriken, instead of his usual three comma's. Small trickles of blood fell from his cold, dead eyes. He knew what had just happened, and his new mission. He had just awakened the famous Mangekyo Sharingan, and his new mission? Kill the Uchiha.

(A few days later)

Naruto was walking through the streets of Konoha, and it was getting dark. There weren't many people walking around at this time, which he liked. It gave him a break from the usual glares and whispers that he has had to deal with almost all of his life.

It made him question why he'd ever protect them, when they would never do the same for him, but he banished those thoughts quickly. He would protect the village for the few people he cared about. The nice people at the ramen shop, Iruka-sensei, Shinsuke, Tokiro, the old man, Itachi and Shisui. He had to admit that most of the Hokage's Anbu were nicer to him than most, and had often jumped to his protection from his beatings. When he was younger he remembered a white haired Anbu operative who used to watch over him almost all day every day.

He never got his name, but he remembered his aura and gravity defying hair. As he was walking he noticed someone running. He had dark hair, and a similar shirt to his senseis, in fact he looked a lot like Itachi. He remembered this boy from his class as Sasuke, a snot-nosed brat, he was spoilt and arrogant despite being next to nothing. He hadn't even awakened the sharingan, and he was ten.

Considering he had nothing else to do today he decided to follow the boy, as he had never actually been in the Uchiha district despite being trained by two of their most respected members. Sasuke seemed to be stressing about something, but before he could figure out what it was an awful smell reached his nose.

He had bled enough in his short life to remember what it smelled like. They hadn't reached the district yet, but the smell was potent and almost knocking Naruto sick. He was surprised that Sasuke couldn't seem to smell it yet. He decided to keep his guard up, if something were to happen he would have to defend himself and Sasuke, as the boy wasn't as skilled as he liked to make out.

Sasuke ran through his district gates. The streets were empty and the lights were off. "That's weird; it's not that late is it? People usually have their lights on, there's no way everyone can be asleep at this time." He muttered to himself as he began walking. Naruto was walking across the rooftops and masking his chakra as best he could, thanking his senseis for his training. He suddenly froze as he felt someone looking at him. It was like a sixth sense for Naruto, as he grew up with stares.

He looked up and could have sworn he saw a shadowy figure disappear out of existence. Before he could investigate further, he heard Sasuke scream. Immediately jumping down he turned the corner and almost threw up. Surrounding Sasuke were dozens of corpses. They looked like Uchiha, from the shirts and hair. There was blood everywhere.

Naruto stayed just out of sight, so Sasuke didn't notice him. Sasuke was panicking like crazy, he didn't know what was happening. Suddenly a thought came into his head. "Mother! Father!" He immediately took off running towards his house, Naruto tailing him at a safe distance. As he was running, Sasuke saw more and more bodies of people he knew, children and adults alike were littering the streets.

"This can't be happening..." Sasuke muttered quietly while running. Once he got to his house he had to take a deep breath, he was terrified of what he might see. He opened the door to the entrance of his large house, while taking his shoes off. He ran through his house in hopes of finding his parents alive. He got to the last door and you could see the fear on his face. He was shaking, and sweat was pouring down his face.

With one strong push he opened the door, and almost puked instantly. His parents were there, dead on the floor in a pool of their own blood. Sasuke began to tear up, but a glimmer of hope entered them as he saw the figure behind them.

"Itachi! S-something happened to Mother and Father... someone..." Sasuke was cut off as a shuriken passed open and embedded itself into the door. Suddenly his shoulder gained a slash mark, and blood pooled out slowly. "I-I-Itachi...?"

"I did it...to test my own powers." Itachi said out of nowhere, scaring Sasuke. "You are weak!" Suddenly Itachi's sharingan morphed into the Mangekyo sharingan, as he casted a genjutsu on his younger brother.

He forced Sasuke to watch as he killed each and every Uchiha he found. Sasuke began screaming as tears poured down his face. So many were getting slaughtered before his eyes. Then it got worse. He watched as Itachi killed his parents. And then the entire thing played over again, and when it ended it repeated again, and again. It was breaking his brother, and he knew it.

Itachi then left the house leaving Sasuke on the floor screaming. As he began to leave the district, he stopped. He heard someone land behind him, but without turning he knew who it was. "You shouldn't be here, Naruto." Itachi's tone was cold, but Naruto knew it was forced.

"Why are you doing this? Where's Shisui-sensei?" Naruto questioned, while keeping his guard up. Itachi may care about him but Naruto knew something was up, there was a reason why Itachi was doing what he was doing.

"Shisui... is dead." Naruto froze. A small tear fell from his eye as he registered what Itachi had just told him. "I killed him... so I could reach the next stage of the Sharingan." Naruto's heart skipped a beat as he watched Itachi's sharingan slowly morph into the three-sided shuriken that was his Mangekyo. "To gain these eyes you must kill your best friend. And I wanted the power. Now watch him die, Naruto." He casted a genjutsu over Naruto, and made him watch a false reality were Itachi stabbed Shisui in the back. Naruto tried to break the genjutsu, but for some reason it wouldn't budge.

"Only the Mangekyo sharingan can break free from the affects of Tsukyomi. In this realm I control time and space, and you will be kept here for 24 hours watching the same events on repeat, and it will last but a second in the real world. Now break Naruto!" Naruto's anger and hatred were rising uncontrollably. Shisui was one of his closest people. He couldn't have just lost one of the only people that accepted him.

His chakra flared to his eyes, the hurt was fuelling his anger. "No... How dare you kILL SHISUI!" Naruto screamed as his sharingan began to morph, shocking Itachi. It became what appeared to be two scythes crossing over each other, with their hilts joining together at the bottom. Tsukyomi began to crack up, before it shattered like glass. Itachi watched as Naruto collapsed to the ground, his eyes changing back to the sharingan, and then back to his normal eyes.

'You will be the one to kill me it seems, Naruto... As you already have my eyes. Goodbye Naruto.' He disappeared in a burst of crows, leaving the village as the man who massacred his clan, and labelled as an S-rank rogue ninja.

Naruto and Sasuke were left unconscious in the Uchiha district, for the Hokage's Anbu to find. Hiruzen was shocked to find Naruto there but had to be proud as he figured the boy followed Sasuke in order to protect him. 'I'm sorry Itachi...and to you Naruto, I am sorry as well..'

So what did you think? good? bad? don't be afraid to drop a review! I should have chapter three ready soon!