Secret Life of a Special Agent

A/N: So this is my second NCIS/Bones crossover fanfic. This is the second to my Life is good story. It doesn't begin in the beginning it's just a continuation one. I am still working on a prequel for Life is good. I'm just having writers block for that one. Constructive criticism would be greatly appreciated. This story is AU and may not follow much from the story just so you know. But anyway on to the story, I hope you enjoy! So just remember Tony is 31 and Seeley is 32. Tony was 20 and Seeley was 21 when they got married.

Disclaimer: I wish I did but sadly I do not own these amazing characters. But if I did I would have them come together in the show, have Tony and Booth together with kids and everything else my way.

Arriving home Tony turned off the vehicle and rested his head on the steering wheel. He couldn't believe he blew up like that in the bullpen. Of course it was justifiable but still he shouldn't have. Looking in to the rear view mirror brought a smile to his face, there sleeping in the back were his three amazing boys.

He had had to stop at the day care to pick up a sick Travis. So instead of having to make two trips he just picked up Jason and Jasper too. Seeley couldn't be reached probably due to a case. He sometimes wishes Seeley didn't have to work so much and had time for him and the kids. He wasn't complaining though, he knew what the job was like.

Finally getting out of the truck Tony moved to the other side and opened the back door. Pulling out the double stroller from the back, Tony placed both sleeping two year olds, Jason and Jasper, into the seats and strapped them in. He then pulled Trav and carried him while pushing the stroller up to the house. He soon had the front door locked and moved to the twins' room. Gently placing both into their own cribs, Tony gave them both a kiss on their foreheads. He then moved to Travis' room to change and clothe him for bed. Soon he was asleep in his crib.

Moving to his bedroom he turned both baby monitors on and changed into sweats and a long sleeve t-shirt. Feeling drained and exhausted Tony curled into bed and was soon pulled into a restful and dreamless sleep.

The house was silent as he entered the front door. Work had ended fairly early so Seeley was able to leave that much sooner. He listened to his voicemails about Travis being sick and felt guilty because Tony was stuck doing everything by him self like usual.

Opening the twins' door Seeley peaked in to see they were still asleep. He smiled affectionately at his first born sons and gave them each kisses on their sandy brown locks on their little heads. He moved to Travis' room.

As he opened the door he saw Travis staring at him with Tony's intense eyes that seemed more mature than they were. His little cheeks were flushed with fever and he looked every bit as sick as he was.

"What Baby Boy, couldn't sleep?" Seeley whispered as he made his way to pick Travis up. Walking him around usually helped him go back to sleep. Just as he was leaving Travis' room he heard the doorbell.

"Huh, I wonder who that could be, huh Trav?" Seeley asked as he pulled Travis closer to him.

Opening the door Seeley recognized the man by the stories he was told, "Can I help you?"

Seeley saw the curious look pointed at him then Travis. But when Travis looked at Gibbs, Gibbs' brows furrowed.

"Who is the boy? Is he related to Tony?" Gibbs asked noticing the boy had the same eyes as Tony's.

"Well yea I would thing he was related to his son," Seeley said being slightly sarcastic but with a smile.

The look on Gibbs' face was priceless, he looked about to have a conniption. "Tony has a son?" his tone was one of incredulousness.

"Yes, he has three. This is just the youngest."

"Who is the other parent? And who are you?"

"Well first I am and I am their father and Tony's husband for eleven years."

"How come he never talks about you then?"

"It's safer that way. You know with jobs like ours it's not safe with people knowing you have a family when they can use that against you for revenge."

Gibbs just nodded.

Travis began to squirm and looked like he was going to start crying.

"Do you want to come in? I need to give Trav some medicine."

"Sure," Gibbs answered following Booth in.

"Sorry about before I was just curious as to why you were here. I'm Seeley Booth," he offered along with his hand extended out towards Gibbs.

"Jethro Gibbs, Tony's boss but you probably already knew that." Gibbs reciprocated the handshake.

Seeley turned around and opened the fridge. Grabbing out the medicine Booth measured out the amount and put it into a syringe. Gently he placed the syringe into Travis' mouth and pressed down the pump sending the medicine into his mouth.

Travis didn't look too happy with the taste and got red faced. He began to tear up and soon busted out crying.

"Oh come on Baby Boy. There is no need for that now. It's just medicine to make you feel better. Come on shhh. Booth continued to bop Travis gently up and down and say reassuring things into his silky brown wavy locks with kisses.

Gibbs' heart constricted just thinking about doing the same thing for Kelly as a baby.

The crying seemed to attract someone, hearing a door open Seeley looked up.

"Hey sorry to wake you up, Trav just needed his meds." Booth said lightly when he spotted his husband in sweats and his dark grey FBI long sleeve t-shirt.

Smiling lightly Tony shook his head, "its okay I just heard my Baby Boy crying," Tony said grabbing Travis from Seeley. When Travis got into Tony's arms he suddenly stopped crying and was soon asleep.

"I still have no idea how you do that," Booth said trying to look mad but failed when the corner of his mouth went up.

"I'm just amazing what can I say?" Tony asked laughing. Giving Booth a kiss Tony was about to deepen it when he heard some one clearing their throat.

Startled Tony turned around and held Travis closer to his body.

"Boss?!" Tony squeaked not at all anticipating the turn of events.

TBC