Hey everyone! Here is chapter 2

Chapter 2: Hot Springs, New Sensei, Massacre

Naruto looked at her in shock. The beautiful woman in front of him was Itachi's mother! "You're Itachi's mother? But you look so young" Naruto questioned.

Mikoto smiled at Naruto "Why thank you. Yes I'm really Itachi-kuns mother"

Itachi interrupted the little talk and asked his own question. "Mom, not to sound rude but what are you doing here spying on us?"

Mikoto looked sheepish at this. "Well you see both your father and I have been suspicious of what you have been doing these past two months. So since I had a chance I followed you to see what you were doing and look what I have found out. Little Naruto-kun here has the Sharingan even though he shouldn't be an Uchiha. Neither of his parents were Uchiha or had the Sharingan so I'm just wondering"

Itachi just sighed thinking of all the trouble teaching Naruto would be if the rest of the clan found out about it. The villagers are already suspecting that the Uchiha were the cause of the Kyuubi attack and that lowered their standing in Konoha. "Mom, please don't tell the rest of the clan that I'm training Naruto. They would make me stop and Naruto has a lot of potential I would like to help him realize" Itachi begged.

Mikoto was shocked. Itachi never begged for anything. "Don't worry Itachi-kun, I wasn't going to tell anyone anyways. Now how about I help you train Naruto here?"

Itachi gave a thankful smile and nodded. "As you already saw Naruto has the Sharingan. That is what first brought my attention to Naruto and after watching him in the academy and saw how the teachers were teaching him I decided to teach Naruto myself. For the past two months I have been training Naruto in the basics and chakra control. Today I was going to start training him in using the Sharingan. Since you have more experienced with me with the Sharingan it would help if you also teach Naruto how to use it"

Mikoto showed a bright smile "Of course I can. Ok Naruto let's get started. Do you know what the Sharingan does?"

"No"

"The Sharingan is a great tool for battle but also aspects as well. There is three stages to the Sharingan. Each stage is shown with either being a One, Two, or Three tomoe in the eye. The abilities of the Sharingan can all be used with any of the stages but with the more tomoe in the eye the more efficient it will be. The abilities include enhanced vision where you can follow fast movements easier, photographic memory or the ability to copy things, and the ability to see chakra in the body but not as good as the Byakugan. There is also certain Genjutsu only the Sharingan can use as well"

"Wow that is really cool! Does that mean I will be able to use those too?" Naruto asked.

"Not at the moment. You still need to train in how to use the Sharingan before you are able to cast Genjutsu. Now let's begin with Taijutsu so you can get used to being able to follow fast speed" and with that she got into the Uchiha interceptor fist.

Let's just say that Naruto got a beating during training.

It has been around three months since Naruto began training with his Sharingan and he had finally gotten used to the abilities. Naruto now used it while reading the History, Math, and English books so he could just memorize it like that. At the moment Naruto was currently skipping class to go see Mikoto at the training grounds. Naruto proposed the Idea of being Dead Last at the academy and both Itachi and Mikoto agreed to it. So in order for his appearance to look like he was an idiot he had to skip class often to make it look like it. During his time he skips Naruto would meet up with Mikoto and Mikoto would teach him about medical parts of being a shinobi. She would teach him about what type of plants would poison and what types could heal. She would also help Naruto work on his chakra control so he could perform medical Ninjutsu.

It was then that he walked onto training ground 43 and found Mikoto sitting in a clearing. She was reading a book about the human body.

"Hey Mikoto-chan!" Naruto greeted. That was another thing that happened. Mikoto just wanted to be called Mikoto-chan because anything else would make her feel old or important. She doesn't like honorifics that much. "I guess you are going to teach me about the human body?"

"Good afternoon Naruto-kun. Yes I will be teaching you about the human body that are sensitive today and points where you should strike at enemies. Come sit down next to me so I can show you the pictures"

Naruto did as he was told and sat down next to her.

"First we will start off with the male body. There are some points in the body where if attacked, it would cause them a distraction and deliver pain. One part would be the stomach, it isn't the weakest point and won't cause much of a distraction but it will cause the victim quite a bit of pain. Another would be the crotch as it is the weakest part of the male body that shinobi might go for. This would cause quite the distraction and a lot of pain. Another would be the neck as it is a vulnerable and weak spot. If it is snapped with enough force then it will break and that would be a fatal thing in the shinobi world. For the female body it is mostly the same even the crotch would hurt even though it's not the same as a males" at this Naruto started blushing as she pointed to the picture of the human body. "In a couple of months I will show you how to avoid a female shinobi seducing you and then would later kill you, extract information from you or even rape you if you are important enough for the village to have child of an important clan or a Kekkei Genkai user" Naruto nodded even though he blushed at the seducing part and how to avoid it. He was only a 7 year old that was almost 8 after all.

It had been 9 months since Mikoto started teaching Naruto about the human body and Naruto after a while got used to the human body of a female after Mikoto had Naruto look at some 'revealing photos of woman'.

[Flash Back 3 months ago]

At the moment Naruto and Mikoto and Naruto were eating lunch if the forest near the hot springs after a little bit of training. After they both finished their lunch Mikoto took out a storage scroll and sent chakra into it and out came a book and a couple of magazines.

Mikoto handed Naruto the book and the magazines. "Here Naruto I want you to look through the magazines and read through part of the book while we rest. I want to see something" Naruto nodded and took the book and magazines and began looking through the magazines first.

Naruto's face quickly turned dark red as he started turning the pages quickly. "M-Mikoto-chan! W-Why did you give me this?!" Naruto cried out in embarrassment.

Mikoto looked at Naruto with a smile "Just read a few sentences from any page of the book before I answer you" Naruto just nodded and turned to a random page and started reading.

Tatsuki was roughly grabbed by her breasts and pressed up against the wall by her lover. "T-Tomoya-kun... do you h-have to be so r-rough?" Tatsuki moaned out as Tomoya's hands started massaging her breasts while sucking on her neck making a hickey.

Tomoya ignored her question as he was beginning to get lost in lust as his lover was just absolutely wonderful when she is pleasured. "I. want. you. now!" he spoke as he picked her up and carried her into their room and placed her on the bed. He immediately took off both of their clothes and he leaned forw...

Naruto snapped the book closed beet red from the scene he was reading and was about to read. He looked at Mikoto with wide eyes as she smirked at him like she just proved something right with a question she answered. "M-Mikoto-chan! Why did you have me r-read this? Isn't this p-p-porn?" If possible Naruto turned even more red.

Mikoto's smirk turned back into a normal smile. "I just wanted to prove something I thought of. I needed to make sure you weren't a pervert... well a pervert that would have blood leak out of his nose. I wanted to do know if you were a secret pervert or not even though you are only around 8 years old you have a mindset of a teenager. We will be going to the hot springs and you will come with me into the woman's side under a Henge. This is a test to see if you could handle keeping up a Henge even under pressure. What better pressure than being in the woman's bath and getting caught. I wouldn't have you do this test if you were in fact a pervert though" Mikoto revealed.

"I-I will b-be doing what!" Naruto yelled out even more red.

Mikoto just stood up and turned towards the bath house. "You heard me, now let's go"

Naruto just hanged his head in defeat and followed after her.

Before entering the building Naruto Henged into a teenage girl with waist length brown hair. She had brown eyes that matched her hair and a pale skin color but not Uchiha pale. She just wore standard civilian clothes that he seen on someone in the village before.

Mikoto walked up to the counter and paid for the two of them to enter the hot springs. After doing that she signaled for Naruto to follow her. They took a few turns but arrived at the door that led to the Woman's side. Without even glancing to see if Naruto was ready, she opened the door and dragged Naruto in.

Naruto's eye's widened at the sight of what he just walked into…

[FlashBack End]

Naruto was still embarrassed of what happened but not as much. Now with Naruto learning about the human body without distractions he is fairly knowledgeable about weak points and what would help the body. Naruto now is trying to incorporate the weak points of the human body into his Taijutsu where he not only protects the weak points he has, but he targets his opponents weak points. Mikoto when she found out about it was very proud of how Naruto was using his knowledge.

Along with the 9 months Itachi had started training him in the advance kunai and shuriken throwing where he had to hit targets that were not in his line of sight. So far Naruto was not doing very well on it. Itachi also 'taught' Naruto the Kage Bunshin along with more chakra control exercises with Naruto now able to walk on water while fighting a bunch of clones. Every once in a while he would fall through. Itachi was mainly teaching him the basics of being a shinobi and its advancements. They were both also trying to help him get his Sharingan to fully mature but they weren't having much luck.

There was also another thing that happened over those 9 months. It was around 5 months ago when Naruto played a prank on Itachi. It involved paint balloons, feathers, honey, and lots of fan girls.

Let's just say that Naruto's training became Hell for the next couple of weeks afterwards.

It has been another 3 months since Naruto thought of the Hot Springs incident and started using the bodies weak points in his academy style Taijutsu and now we find him with both Itachi and Mikoto at training ground 43.

"Hey Itachi what are we doing during tomorrow?" Naruto asked as he just finished his training with both of them. He went through everything he learned with Itachi and he fought Mikoto while yelling out parts of the human body and herbs that are poisons and herbs that could help treat injuries.

Itachi sighed as it finally came to tell Naruto the bad news. "That's the thing Naruto… I can no longer train you like I have been doing. My father and the rest of the Uchiha clan have been suspicious of what my mother and I do in are free time out in the village. The Uchiha clan right now is having some tension with the village and there is other problems that have been coming up. I have taught you for a year and a half on the basics of being a shinobi along with advanced exercises with them. Any day now they could send out someone to spy on us to figure out what we are doing and with me training you instead of someone inside the clan will cause huge amounts of problems for the village. I am also goin to have to start training my little brother Sasuke in becoming a shinobi just to distract my father from anything else. I'm sorry Naruto but I can't help you train that often anymore" Itachi apologized with sincerity.

Mikoto spoke up next but she got on her knees to face Naruto better. "Along with the same things Itachi-kun said, Fugaku has been getting suspicious of me even more. I believe that he believes I'm cheating on him with someone else since in the middle of the day I leave and then I comeback sometimes all sweaty from training but he thinks differently. He hasn't said anything because I know that he has been cheating on me with other Uchiha Woman, but I don't care anymore since I lost all love for him after Sasuke was born. It would cause problems in the clan if they continued believing it though. You can still skip the academy sometimes and visit me I you want but make sure no one see's you" she said as she quickly gave Naruto a hug.

"It's all right. At least you both have given time to even help me with my training and becoming my friends. It's more than I thought I would have" Naruto said as he wiped away some tears.

Mikoto stood up and after both of them apologized again, Itachi and Mikoto used shunshin to get away. Naruto was left there with a few tears still spilling out of his eyes, it was then that someone else used shunshin to appear in front of him. When he looked up at them it was none other than Shunshin no Shisui himself.

Shisui had watched Naruto train with Itachi and Mikoto and he would say he was impressed at what he saw. Not only did he have the Sharingan, but he was using it effectively in battle. Shisui had a lot more time than Itachi and Mikoto did and the clan wasn't suspicious of him and wouldn't even become suspicious of him because of how loyal he was to the clan. Just because he was loyal to the clan didn't mean he follows their stuck-up ways and how arrogant they were. Shisui decided to finish what Itachi started.

"Aren't you Shisui? Itachi's bestfriend, right?" Naruto asked.

"Yeah and I just saw you training and I must admit you're good for your age. I also saw that Itachi and Mikoto can't train you any longer do to bringing suspicion from the clan. How about I make you a deal?" Shisui offered.

"What is this deal?" Naruto asked in Suspicion.

Shisui looked a little sheepish. "How about I train you? All you have to do is do your best. I have more time than Itachi did to train you anyway and the clan won't get suspicious of me or what I do so you don't have to worry about that so how about it?"

Naruto looked at him in surprise. "Sure you can train me. I always do my best anyways" Naruto said with a grin.

"Ok then we could begin tomorrow. I saw what you did today so I have an idea of what you need to learn. I come up with something for tomorrow you just need to show up."

"Alright Shisui-sensei!" Naruto then ran off to go home.

The next day Naruto showed up at the training grounds he found Shisui already there.

"Hey Shisui-sensei! What will we be working on today?" Naruto asked in an excited tone.

"Calm down Naruto. From what I noticed during your training yesterday you can only use Genjutsu with your Sharingan. I would like to fix that, I would like for you to use Genjutsu and Medical Ninjutsu with great chakra control even with your large chakra reserves that would make it impossible for others to do any Genjutsu. I know that Itachi taught you how to use the Kage Bunshin, so I would like for them to do chakra control exercises until you could at least do one Genjutsu without your Sharingan. After that I will begin your elemental training after learning what your elements are as it would be extremely helpful in the future. Since I know how to use a Tanto I will also teach you how to use one and teach you a Kenjutsu style. I will also teach you the Uchiha Interceptor fist since Itachi and Mikoto didn't. Since you're an Uchiha you should deserve to know it. After your elemental training I will teach you some elemental jutsu to go with your elements. The most important thing is experience, when you are old enough I will take you with me on a bandit clearing mission and I will have you fight them to get the experience" Shisui explained

Naruto nodded and had a megawatt smile on his face. "Awesome!"

Shisui smiled at the attitude. "Let's get started then!"

For the next year Shisui taught Naruto and the two became really close like brothers. They would sometimes play pranks on the village but only Naruto is caught when they find out about the prank. They would go practice in the most fun of ways and even did challenges against each other. One time Naruto bet Shisui that he couldn't get a date if he just walked up to a girl and use a pick-up line. Shisui came back the first time with a red handprint on his face making Naruto fall over and laugh. It was a couple of weeks ago when Shisui taught Naruto the Shunshin and Naruto picked it up really fast. He still wasn't as good as Shisui but that was to be expected.

Shisui one time did a prank on Naruto even though Naruto didn't like it, he still found it funny. Shisui was going introduce Naruto to his crow summoning's but he decided to leave the introductions to the crow. The crow followed Naruto all day and even while Naruto was eating his ramen, Naruto reached up for his next bowl but the crow took it and started eating it. Let's just say Naruto chased that crow around for the rest of the day.

Since the beginning of Naruto's training under Shisui he had learned the Interceptor fist for Taijutsu but he didn't use it that much because it didn't feel right to him. Naruto started learning Kenjutsu from Shisui as Shisui bought Naruto his own Tanto to use. He was only around Genin level with the Tanto and he hasn't been practicing that much due to him training in other subjects.

"Ok Naruto, since you have trained your Jonin level Reserves up to Jonin level chakra control, I think it's time for me to teach you elemental manipulation" Shisui started.

Naruto grinned and asked a question. "But how will we know what my elements are Shisui-sensei?"

Shisui pulled out two pieces of chakra paper and handed one to Naruto. "This is chakra paper. Once you channel chakra into it the paper will react to what your affinities are. Your main affinity or affinities will react first. Your secondary affinities will react second and so on so" Shisui channeled chakra into his paper and it started to catch fire, wrinkle, and cut in half. "As you can see the fire in obviously my fire affinity, the wrinkling is my lightning affinity, and the paper cutting in half is my wind affinity. I got the Fire affinity from my Uchiha blood and maybe the lightning affinity with it. Wind is just my natural affinity even though no one know that I have one because I don't use it often. Now channel chakra into your piece of paper so we can begin your training"

Naruto did as he was told and both of them were shocked at the affinities. "Is that suppose to happen Shisui-sensei?" Naruto's paper caught fire, wrinkled, and spit into two at the same time signifying that he had three main affinities. That was all as afterwards the paper turned to dust and was soaked with water which signified that he had high affinities to both Earth and Water as well.

"N-No. Only a few has had all five affinities before. Like Sandaime-sama also had all five and the same could be the same for Kakashi Hatake but he naturally gained them after using all five natures constantly. A kid your age should only have one affinity maybe two at most if you have a Kekkei Genkai, but you have all five. Your main affinities only look slightly more powerful than your secondary affinities" Shisui started smirking like a devil like he had just gotten away with a prank and Naruto didn't like that smile. "You know what that means right?"

Naruto gulped in fear and asked a question he feels like he would regret in the future. "W-What does it m-mean?"

Shisui now had a full blown grin on his face as he told Naruto. "It means... I will have to train you into the ground everyday in order for you to master those affinities as fast as possible. It will be known as Shisui's Hell training!"

"Why do I have to learn it as fast a possible Shisui-sensei?" Naruto asked in confusion.

Shisui lost his grin and sighed. "There is problems going on in the clan that I thought I got rid of a year ago. There may be a time where I can't teach you for a couple of weeks so I can resolve this problem. There is also the possibility that I may die in battle and I can't finish training you in your affinities"

Naruto yelled out "But you can't die in battle, what about everyone that cares about you?!"

"Naruto I was only telling you something that is a possibility. It isn't impossible for me to die you know! That is what a Shinobi is... we will all one day die it jsut matters for a shinobi if it is on a mission or of old age. As a shinobi I have to expect to lose my life for the village as I believe a true Shinobi must protect the village from within its own shadow"

Naruto looked down and nodded. He will take his words to heart and will start using that mindset in the future when he is a shinobi. He raised his head as the thought of the Uchiha problems comes to mind. "Shisui-sensei, what problem is with the clan that you solved last year?"

Shisui thought it over as if he should tell Naruto about the coup, lie about it, or not tell im anything at all. He decided to just tell Naruto as he believes Naruto is mature enough to know about it and Naruto was practically family with him, Itachi, and Mikoto.

"Alright I'll tell you. Since the Kyuubi attack the villagers and some of the shinobi of the village began to lose trust in the Uchiha clan as they believed it was the clan that caused the kyuubi attack since while fighting the kyuubi some shinobi swore they saw a Sharingan in the kyuubi's eyes. Since Madara Uchiha was able to not only summon the Kyuubi but also able to control it, the village believes that we summoned it and controlled it into attacking the village. The clan doesn't like the spite they are getting and started distancing themselves from the rest of the village if you haven't noticed." Naruto nodded at this saying he noticed. "After living with it for six years they began to believe the Uchiha clan deserves to rule over Konoha and they began to plan a coup. If this coup even started then it would have caused a civil war in Konoha and that would have led to the Fourth Great Shinobi War for many different reasons. I used my Mangekyo Sharingan to cast a Genjutsu over the clan for them to stop the coup and it worked... until now that is. For some reason they are planning another coup for the same reasons and I might have to go use my Mangekyo again to stop it but I fear that one of the higher ups in Konoha would want the Uchiha clan to be simply eliminated to stop all future problems the clan would cause. If it wasn't for my Genjutsu, I'm sure that he would have went behind Sandaime-sama's back and eliminated the clan himself and maybe take a few Sharingan from us as well. So in around a years time I might have to leave again to stop this coup but that man might give me trouble and try and stop me" Shisui finished.

Naruto had wide eyes at the revelation and soon asked a questions. "Shisui who is this man? What is the Mangekyo Sharingan? I thought there was only three stages to the Sharingan?" Naruto asked wanting to know as much as possible.

Shisui didn't want Naruto to know to much about the Mangekyo but he knew he had to tell him so he could have knowledge for the future for if he ever fought a Mangekyo user in the future. "Naruto... It is a forbidden stage of the Sharingan that not many know about due to how it is achieved. For an Uchiha to gain the Mangekyo they would have to experience great amount of grief or sadness. It is believed you would have to kill your best friend to gain it as the Mangekyo holds a huge amount of power. Power always has it's price though and the price of using the Mangekyo is you will slowly go blind from it. I have a different theory on how to gain the Mangekyo though as I didn't have to kill anyone close to me. When I first activated my Sharingan I trained with it constantly and I quickly matured it after a couple of years... but not as fast as Itachi did. My family believed that I should be more like Itachi, why wasn't I a prodigy like Itachi, or why couldn't they have Itachi born into their family instead of me. After hearing all those things it left a mark on me... with all the sadness I had from what they said I activated my Mangekyo. From the forbidden scrolls on the Mangekyo I got my hands on it was suppose to be much more for me to activate my Mangekyo. I believe that I was already starting to unlock my Mangekyo from training my Sharingan constantly and with what my family said it just finished evolving it for me. As for this man... it is Danzo Shimura, one of the Elders on the council. He is a very secretive and manipulative man that is hungry for power and wants to become Hokage. I want you to stay away from this man and keep your Sharingan a secret at all cost from this man as he might try to steal yours since you are not protected by the Uchiha clan." Shisui finished with a serious tone but still had a few tears coming out of his eyes.

Naruto couldn't believe it. That all happened to him? But Shisui is always so happy and carefree. "Why did you tell me this? Shouldn't you keep this a secret as it is really important?" Naruto asked.

"Naruto I told you because I believed you deserve to know. You are like a brother to me just like Itachi. Heck even though you are only 9 years old, you have a mindset of a teenager so it feels like I'm talking to someone much older. I also consider you my best friend along with Itachi and I believe Itachi thinks of you the same way. Though I don't know about Mikoto because I have know idea what goes on in that woman's head" they both started laughing at that until they both calmed down a few moments later.

"Shisui... You still haven't told me everything have you? Do you know who else has the Mangekyo?" Naruto asked.

"No I haven't. I told you everything about the Mangekyo because I would like for you to activate it yourself through constantly working your Sharingan. As for who else has the Mangekyo... The only person I know besides me that has it that is still alive is Mikoto when she unlocked her during the Third Great Shinobi War. From today onwards you will be using your Sharingan in almost everything you do. While you have clones training in how to use your affinities I will be training you in Kenjutsu, Taijutsu, Genjutsu, Ninjutsu, and Shurikenjutsu. You will have to also work on your chakra control once in a while because I'm sure your reserves will get larger during training. Now let's begin!" Shisui finished with a shout.

For the next year Naruto had clones work on his Fire, Wind, and Lightning affinities while he trained with Shisui in the physical stuff. Naruto had improved a bunch in such a short amount of time. By the end of the year Naruto was already low Chunin level in experience and if you just counted his skill set it would be High Chunin to low Jonin level, he just needs to know how to use the information properly and fighting experience to be Jonin level. Even with the amount of training Naruto did with his Sharingan he never did activate it and Naruto was disappointed by that. Shisui was also allowed to take Naruto on a Bandit clearing mission with secret permission from the Sandaime as he already told the Sandaime about him training Naruto. We'll save how that mission for later as it was filled with problems and experience.

Naruto obviously didn't learn from his time with Itachi about pranking them as Shisui upgraded Naruto's training to Shisui's Hell version 2. Naruto was even more tired afterwards than usual and when Naruto went to the academy, everyone laughed at him thinking that he was just really tired from doing pranks or something. They would never know how hard Shisui could train him into the ground as they never truly trained in their lives. Even the Clan Heirs.

During the Two years of training under Shisui, Itachi and Mikoto would help Shisui train him or even just come over to just hang out with them. A couple times they snuck out of the village to eat at a neighboring town to go eat as a group. It brought a smile to Naruto every time he thought about it.

With such a great year of being with them Naruto didn't know how close he was to losing all of them.

It was another night in Konoha or was it. There was a figure in one of the training grounds that looked like they just got done with a fight and they were pretty injured. They got some blood and ran through a couple hand signs before slamming their hand on the ground summoning a creature. He gave a scroll to the summon as it left to go towards its destination.

On another part of the Village in the Uchiha compound you could find dead bodies littering the streets. Another figure was running from house to house killing the Uchiha clan members. If the figures goal was to kill everyone they still had a few houses left before anyone else arrives at the compound.

In Naruto's apartment he was fast asleep, even though Shisui said that there wasn't any training that day Naruto still trained by himself. The summon that was summoned earlier started pecking at the window next to Naruto's bed.

Naruto slowly woke and turned on the lights and went to the window. The summon was none other than Crow of the Crow summons. It's weird to be named after what you are but Naruto didn't speak about it when he and Crow first met... which was when Crow stole his ramen. Opening up the window Naruto grabbed the scroll Crow was carrying and quickly read it.

Naruto's eyes widened a little as he was surprised. Turning to Crow he spoke. "Do you know why he wants me to meet him at training ground 31 Crow?" Naruto asked. All he got was a shake of its head no before it returned to the summoning realm.

'Why would Shisui want me to meet him a training ground 31 in full shinobi gear in the middle of the night?' Naruto wondered.

After quickly getting dressed in his shinobi gear with his own Tanto strapped to his back Naruto quickly jumped out of his window and used Shunshin to get to the Training Grounds.

Once arrived he didn't see Shisui anywhere on the field next to the Naka river, he decided to wait a few minutes for him. After a couple of minutes multiple cloaked shinobi jumped out of the forest and attacked him. From what Naruto saw there was Seven of them and under the cloaks they wore Naruto saw the 'Ne' symbol under the moonlight.

"Why are you attacking me?! What does Danzo want with me?" Naruto yelled out as he jumped back from a swipe from a Tanto.

One of the 'Ne' Anbu members answered. "Danzo-sama want your eyes" and with that they continued their attack.

Naruto's mind begun to run a mile a minute as he thought over the situation in his head. Shisui said he was going to meet up with him here but he wasn't and all he got was 'Ne' attacking him for his eyes. Naruto came up with one conclusion... These 'Ne' members already fought Shisui and took his eyes and now they were coming after his. With the thought of Shisui dieing Naruto fought hard. After fighting for ten minutes Naruto managed to destroy six of them that turned out to be just clones. He used a combination of Genjutsu, Taijutsu, and a few Ninjutsu to fight them off. Since they already knew about his Sharingan Naruto used that as well, but he was still tired out after fighting six of them. Thinking that the seventh one was just a clone as well Naruto charged and stabbed the seventh cloaked member in the stomach. He was surprised when he didn't dispel and he finally noticed that he could see a single Sharingan eye under the mask.

Naruto shakily removed the cloak and mask to come face to face with Shisui.

Naruto's eyes widened in horror at what he was seeing. "S-Shisui... Why did you do it? Why did you make me think that you were 'Ne'?!" Naruto yelled out with tears streaming down his face.

Shisui coughed up more blood as he looked at Naruto with his single Sharingan eye. "I-I was already dieing Naruto. I wanted to see how much you improved under me before I died. You wouldn't have fought me all out in a death match if you knew it was me so I disguised myself as 'Ne' to get you to fight all out" Shisui answered truthfully.

"B-But why are you dieing? What happened?" Naruto asked while crying.

"Remember what I told you a year ago about the Uchiha clan planning another coup?" Naruto nodded and realization slowly appeared on his face. "The Sandaime sent me to use my Mangekyo on them again to stop the coup for good this time... but on my way I was stopped by Danzo and his 'Ne' members. I managed to kill Danzo but it seemed he had a Sharingan already and he used a forbidden Sharingan jutsu to bring himself back to life and he managed to steal my right eye because I was surprised. Knowing that I couldn't win anymore I managed to get away where Itachi found me. I already told him that I was dieing and it was too late. Without my Mangekyo I can't stop the coup so we lost and Danzo won. In order to stop a civil war from starting the elimination of the Uchiha clan is unavoidable. That is what Itachi is doing now... though he will spare all the children that didn't know about the coup along with Mikoto since she was against the coup in the first place. He should be here soon but I will be gone by then. Naruto I want you to have this scroll, in it has every jutsu idea thought of that might work along with the Crow summoning contract. Itachi and I are the only summoners of the Crow clan and they only allow two summoners at a time... but since I will be dead soon it won't matter" Shisui takes the Tanto out of his stomach with a painful cry and along with his own Tanto gave them to Naruto. He reached up and plucked out his left eye and implanted it into a crow that landed on his shoulder and he handed Naruto the crow where it then dispelled.

"Naruto I would like to give you my remaining eye as I only trust you and Itachi with it... but I don't believe Itachi will need it so it's yours" Shisui explained as he walked towards the cliff and turned towards Naruto. "Naruto I want you to know that I am very proud of who you are becoming and your training. I know I said this before... But I consider you as a brother and my best friend. Goodbye Naruto and I hope you can forgive me for what I have done" and with that Shisui used Shunshin over the cliff and down towards the Naka River.

Naruto fell to his knees facing the cliff with an expression of pure sadness and grief. Unconsciously he played over what Shisui told him. "Naruto I want you to know that I am very proud of who you are becoming and your training. I know I said this before... But I consider you as a brother and my best friend. Goodbye Naruto and I hope you can forgive me for what I have done". Naruto's let out a loud cry as his eyes changed from a fully mature Sharingan to a eight rounded star with a blood red ring in the middle. The star was on the blood red color Sharingan pupil.

After a couple of moments Itachi appeared in front of him and Naruto looked up and Itachi gasped. What Naruto saw was that Itachi had spots all over his Anbu uniform and he was carrying a scroll.

"I-Itachi?" Naruto spoke.

"It's me Naruto. Even though you just went through something I would like to congratulate you on activating you Mangekyo" Itachi said.

Naruto's eyes widened at this and his quickly looked into his Tanto that was next to him and saw his eight rounded star Mangekyo. Ignoring it for now Naruto looked back at Itachi and asked a question that had him bothered ever since he heard from Shisui about what he was doing. "Itachi about the clan..." he didn't finish because he knew he got the question through.

Itachi let more tears fall from his eyes as he answered. "Yes I just finished. I left the children that didn't know alive, but that was only around 15 out of the 125 Uchiha members before"

Naruto didn't hear anything about Mikoto be among those survivors and his heart started beating faster as he asked. "Itachi... what about Mikoto-chan"

More tears fell out of his eyes as he lowered his eyes. "W-When I arrived at my parents bedroom I found that Fugaku had impaled a sword through her. I killed Fugaku as soon as possible but it was already too late, she was going to bleed out in a minute. Before she died she wanted me to take her eyes and give them to you. I didn't know why until she activated her Mangekyo. Even though you are not a full blooded Uchiha and not related to Mikoto, the transplant would still word because of you having Senju DNA in you" Itachi handed over the scroll he was carrying to Naruto who was now sobbing with his Mangekyo still activated... he would remember this for the rest of his life.

"In the scroll contains her eyes along with some jutsu I wanted to teach you as well as other things" Itachi explained as Naruto looked at the scroll.

"I now know why Shisui did the things he did. He wanted his death to mean something and I believe helping you achieve your Mangekyo was an effort for you to remember him by. Naruto when you are used to your Mangekyo, transplant my mothers eyes into you so you can gain the Eternal Mangekyo Sharingan" Itachi then put his mask back on and prepared to leave. "Naruto I am also proud of what you are becoming and how your training has progressed even though I was only ale to train you for a year and a half. Shisui probably already told you this but I also see you as a brother and a best friend. I would like for Sasuke to come avenge his clan by killing me because I have already tainted the name so for that I am sorry. Sasuke also activated his Sharingan so if he doesn't remember don't tell him he has it or I fear he will become arrogant and that would be the end of him. One last thing... Underneath the meeting hall his a secret meeting room and also the place where the Uchiha Tablet is. Once your ready read it, it will explain a lot to you. Goodbye Naruto, I hope you could forgive me in the future even though I don't deserve it. Take care of the other Uchiha kids for me!" and with that Itachi Shunshin away to report to the Hokage and he soon after left the village.

Naruto just stayed on his knees for a long time thinking through everything. Everything was just fine until a few hours ago... and now he lost everything. Naruto couldn't handle the stress anymore and screamed into the night sky and fell over unconscious.

Chapter End

Hey everyone I just finished the chapter and I must say it went pretty well. I wrote some interaction between Naruto and his teachers just so it shows how important they become to Naruto. For the hot springs part... I will put that in another flash back in a future chapter as I believe it would be better for another time. Write a review if you guys like the small lime I wrote... if it is a lime IDK.

For the pairings, someone mentioned that it should just be Mikoto and I'm thinking about that. I will no longer have Female Haku in the pairing but I am thinking about having another Uchiha girl in the pairing. The Uchiha will be the OC I'm putting in next chapter.

Please leave a review about how well I did things! Thanks!