Author's Note

Before I begin on with the story, I want to sort of give you an idea of what this alternate universe is like. There are several planetary systems, each denoting a specific game. For instance, Snake comes from the Solar System because he is from Earth. Samus comes from what I made up as the Chozon Prime System. Link, Zelda, and Ganondorf from the Hylian System (that includes Planet Hylia and Planet Twilight). Ike and Marth from the Fire Realm (system). Wolf, Fox, and Falco from the Lylat System. Capt. Falcon hails from no place in particular, but is found on the Port Town Aero Dive and other places such as Big Blue, where he races. Pit comes from the Angel Land System. The League of Cosmos is situated in the center of this all, on a planet that belongs to the Republic System, where everyone is united under one government.

The technology of this intergalactic fictional story is a combination of high and low tech, and fantasy and science fiction. For the sake of characters like Ike, Marth, Pit, Zelda, Ganondorf, Link, etc., they have the least technological of weapons, star fleets, etc., when compared to the worlds of Samus and Snake. However, you'll have to imagine them as sort of "upgraded", (plus they have magical powers). As an example, Link's shield and sword will have "deflector" properties, where he can protect himself from laser fire.

I hope this makes sense.

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PART ONE

CHAPTER TWO: LINK

"Ganondorf, you don't have the consent of Princess Zelda to use the Hylian fleet for this task that you alone have volunteered for," remarked Link, as he exited the platform and followed Ganondorf down the hall. He had been disconcerted by Ganondorf's unexpected and rash decision at the meeting.

"Listen, this investigation in the Chozon Prime will be a flash in the pan. What's more important is the upcoming elections and gaining as much support as we can. You think mere appearances at the assembly is enough? I fought tooth and nail for my position as representative on Planet Twilight, and I'm NOT going to spend my days here twiddling my thumbs. Unlike yourself, I've never had Midna on my side as you have had Zelda," Ganondorf shot back.

Together, the two walked back to their private quarters. Link took his place at the head of the one table in the center of the room; Ganondorf sat opposite. He studied Ganondorf's face, trying to understand his motives, hoping his body language would give away something. But his face proved nothing, as it usually had unless his wrath was provoked. Finally, Ganondorf, who had been studying a hologram of the Chozon Prime System in front of him on the table, got up and said to Link:

"It's time we go to the private hall and proceed with our plans in the Chozon Prime, with their leader and Wolf and Fox."

Link narrowed his eyes slightly as he looked at Ganondorf. "Right. I'll be there in a moment. I need to make a call."

With that, Ganondorf smoothed his cape and exited.

Link pushed some buttons that were built-in on the table and up arose a holographic screen. Once he had entered the proper frequency, Zelda, who had been seated at her throne in Hyrule Castle, appeared on it in front of him.

"Link?" she inquired, raising her brows. He paused and studied her face, noticing her deep blue eyes and golden long hair, with curls that hung in front of her pointed ears. She had been considered one of the most beautiful of women in the galaxy, though only few truly knew of it because she never left Hyrule. That was the extent of her devotion to her people.

He considered how he would say this:

"Zelda, I have some …bad news. Ganondorf has, without your consent, granted the Chozo the Hylian Fleet to aid them in investigating a surge of space pirate activity in the Chozon Prime." He paused, drawing his breath. "I haven't stopped him. I wanted your opinion."

She cocked her head and leaned her body to the side, resting her hand beneath her head.

"How do you feel? It seems rather absurd that of all people, Ganondorf is extending his charity. And of all armies set up for the task, that our small one is suitable. Did the 46th Minister give his approval?"

"Yes," Link said, "But I think it was a rather haste decision because of the upcoming elections and the present war in the Fire Realm."

"I agree. Link, I trust your ability to get to the root of this sudden judgment on behalf of Ganondorf. You need to make sure he doesn't step out of line."

"So you condone his decision? Shall I stop him or not?" Link asked.

"No. The Chozo are a respected and intelligent people. I believe we can all benefit from this service. Perhaps the Chozo will return the favor by helping our defenses. They are the most technologically advanced race in the galaxy," she replied.

Link looked down toward the table. He didn't agree with Zelda on this one, but she was the Princess, and he was just a Parliamentary member who had to take his orders as a representative. "I just wish Midna was here beside me instead of Ganondorf. I wouldn't have to deal with this," he thought. Midna had been the representative of Planet Twilight until Ganondorf had defeated her a year ago in the representative elections. Through a slander and smear campaign, Ganondorf had secured his place, and Midna's career was destroyed. Rumors flew that she left Twilight to Hyrule, in secrecy, hoping to lay low for the time.

"Alright Your Highness," Link finally said, "I have a meeting to attend. I am closing this line."

"Link?" she said hastily.

He paused.

"Although I am okaying Ganondorf's decision, I know something isn't right. Please be careful," she said.

Link nodded and closed the line. He shut down the hologram and got up from his seat, and proceeded down to the private hall.

As he entered the room, he noticed the Chozo leader getting up from his seat. Confused, Link glanced to Ganondorf, Fox, and Wolf, looking for an answer.

"Ah, Link," the Chozo leader said, "we have just finished our plans. I am sorry that you have come too late. Ganondorf should fill you in on the details. Everyone, thank you for your generosity. On behalf of my people, I extend my deepest of gratitude. Now, I must return to my homeland. Good luck." With that, he slowly walked out of the room as Ganondorf, Fox, and Wolf stood from their seats. Once he was gone, Wolf and Fox left, followed by Ganondorf.

"What's the plan?" Link asked Ganondorf, following him down the hallway.

"You are to command the Hylian Fleet to the Chozon Prime."

"What?? You're still making decisions for other people? Zelda isn't going to approve of this! I have my place here!" Link exclaimed.

"So you mean to tell me, that although I practically gave you a nomination to be the 47th Leader of the League of Cosmos, straight from the Chozo Leader, you're still going to whine and complain? Just why are you a representative here?" Ganondorf snarled.

Ganondorf was sorta right. Link had become a representative at Zelda's request. He had saved Hyrule several times from ruin, but that was what he was good at. Not politics.

"Besides," Ganondorf continued, seemingly reading Links thoughts, "You are considered by most Hylians to be the "Hero of Time." Saving people is what you're good at right? Well, the Chozo are in need of a "hero's" assistance," he sarcastically remarked. "I will take care of Zelda. Don't worry, she'll approve of this decision."

Ganondorf then stopped at the Lylat's private quarter, where Wolf was waiting in the doorway. "I have something to attend to," he said, and him and Wolf exited the hallway and shut the door.

Fox McCloud was standing near the edge of the hallway, against a wall, fixing something on his wristband communicator. He looked up at Link and said, "Hey, I'll fill you in on the details." And the two of them continued up the hall.

After Fox had told Link of their plans, they parted ways, and Link returned to the Hylian chamber. "How am I going to make sure Ganondorf doesn't step out of line? He seems to always be one step ahead of me, and nobody else sees a problem with this," Link pondered. He sat in silence for a while. He hated feeling out of control of things, and politics was all about that. He began to reflect on the days when he and Midna would retire back here after a boring and long meeting at the assembly. They would joke around, eat lunch, or dinner if things got particularly late, and they never really disagreed on any issue. All the reminiscing reminded him of how much he hated Ganondorf. Their constant arguments and awkward silences between Parliament sessions drained him. Sighing he stood up: "Maybe I can get a private meeting with the Minister. Perhaps I can make a case to him."

Once he secured a meeting with the 46th leader, Sir Magnus of Fynn, Link walked in. The usual round of formal introductions commenced, then Link got straight to the point: "Sir, I have a problem with sending the Hylian Fleet to the Chozon Prime. Our army is too small, it is possible that some space pirates could easily destroy us. We are not a technologically advanced people and have never sought after such modernization! I am concerned, simply, for the well-being of our defenses and our military..." Link began to feel like the Minister wasn't listening. It was true that Sir Magnus was old, maybe slow, but he was patient. Something seemed...different.

After a moment of silence, Sir Magnus said, "The Lylats are an advanced people. They can support you in this investigation. I can assure you that."

"I don't disagree with you but-" Link was cut off by Magnus, "But that is all I can say about the issue. The elections are coming up. This is a very busy time for me. You must understand that I cannot possibly hope to continue as the Leader of the League without resolving the issues of The Prince of Altea's war with the Beast, Hawk, Raven Laguz Allaince. Without their representation, I lose support. However, I can assure you that Planet Hylia's defenses and military will be looked after as soon as the Fire Realm war is resolved. That is all."

Link's mouth almost dropped. He couldn't believe that the Minister was more concerned over his political career than the well-being of Hylia. Of course, Link also didn't like politics, so it was natural of him to be shocked. He promptly exited the room without saying any formal goodbyes, after getting worked up over what had just played out. Just as he was walking down the hallway, Fox intercepted him.

"Link, it is time we move out. Wolf has left already and we mustn't be too far behind. The Chozo Leader wanted a special meeting to be held once we arrive."

"Alright then...fine. I'll gather the Hylian Fleet and then catch up with you," Link said impatiently.

After Link had boarded his private starship to go back to Hylia to gather the fleet, he recieved a strange message from an unknown, hooded figure on his COM (communication) screen. As the person spoke, periods of static interference broke through. "Mistake... ...Trap... ...the beast with two faces... ..."

"What the...?" Link said aloud to himself. The prophetic-like message startled him, especially considering the recent events. He tried to brush it off, but his thoughts kept focusing on that mysterious message, even as he arrived in the Chozon Prime with his fleet.

Up next ... Chapter Three: The Bounty Hunter Samus