Disclaimer: I do not own Neon Evangelion Genesis or Neon Genesis Evangelion: Campus Apocalypse, they belong solely to their rightful owners.

Warnings: This story will be YAOI, ShinjixKaworu. It you do not like DO NOT read. This warning is for your own good and mine if you do not like BoyxBoy goodness! Also the characters will be OOC so, once again, if you do not appreciate this then DO NOT read!

Author's Note: Be aware that I did change the Timeline around to accommodate my ideas for the story. So ages will be different. Events will also be different. This story will also have only elements of Campus Apocalypse, so sorry for those who wanted the EVA units in this story.

Chapter Warnings: WARNING!CHAPTER CONTAINS LEMON/SLASH/YAOI/BOYxBOY SCENE!WARNING!

Evangelion: Angel's Egg

Launch 003: Answers

Shinji sat in on the grim filth floor of an abandoned warehouse, huddled in a corner. His knees bound to his chest by his arms that wrapped securely around them. The events of today were playing back and forth in his head, trying to see any joke of it, that it was all just a dream.

"Here."

The brunette looked up to see Kaworu standing in front of him with a bottle of water handed out to him, another in his other hand. Shinji took it without a word and broke the seal; twisting off the cap he took a sip of the cool refreshment. He took no notice to Kaworu sitting down beside him and doing the same. They sat in silence for a bit, neither willing to speak the first word in such an awkward situation. Kaworu himself actually looked like he was waiting for Shinji to speak, with that cool sophisticated smile on his lips.

There was a jarring creak and the two boys looked up to see Shinji's uncle walking in before he sealed off the warehouse doors once more.

"Well, they've sent out Nerv operatives, seems the situation is now under control."

He walked over, a duffel bag in his hands. Shinji stared as the man walked over to the parked car a few feet away from them and set it down on the hood. The man opened it and began to take out weapons, guns to be precise, shocking Shinji.

"Wha-how?"

Fuyutsuki looked over to him and then turned his attention back to assembling a sniper rifle. Shinji snapped out of his shock and frowned, glaring at the man before he set his bottle water down, he stood and walked over to him.

"You owe me answers, uncle!"

The man turned his attention to him, looking into Shinji's eyes that held determination, and he knew that the boy would not take no for an answer this time. He sighed and set the gun down, giving the boy his full attention.

"What were those things?" asked Shinji after pausing to decide what he would ask first.

The man turned to him and seemed hesitant to answer, "They are the children of Lilith, creatures born from her mutated cells."

"Lilith?"

"An Angel, I am sure Kaworu has mentioned them once to you before. They are beings born from the First ancestral race, or should I say our creators. Lilith herself is not a full born Angel, but a creation from Adam's cells, the first Angel."

Shinji knitted his eyebrows together, "hold on, this makes no sense, what are you talking about!"

The man sighed, closing his eyes for a moment before he looked back at Shinji, "Years ago earth was attacked by what he call Angels. It began the first apocalypse, of first impact, destroying Tokyo and practically the entire world. Your mother, Dr. Yui Ikari was partner of mine during the testing phase that began the Impact. The Angel had been discovered in the ice caps of the Himalayas. It was our duty, your mother, mine and your fathers, as well as several other scientists, to discover what this was. But we made a mistake."

The man grits his teeth and seemed to be lost in a set of memoires.

"The Angel awoke and your mother was caught in the awakening, she was seven moths pregnant with you."

Shinji gasped, he had never known this before.

"Your father was distraught when we found her, we all were. She was not in the facility at the time and could not get to the shelters in time to save herself and you. When she was found she was in labor, and seemed to gain something in the contact with the Angel. We called it Geo-stigma."

"Geo-stigma?" asked Shinji as he watched the man walk around to the passenger side of the car. He took out something from the glove compartment before walking back to the teen. Shinji looked down at what was being handed to him, they were pictures.

Taking them he looked through, shocked as he went through them, his disbelief of them printed on his face. There was his mother in agony, lying on a hospital bed, surrounded by doctors, her body covered in what looked like black soot, there was even a photo of a baby, of him he guessed, covered in the same thing. But he did not have them now.

"The birth was too much for your mother, she nearly died and you with her, but somehow they pulled through, but it was a question as to how you two were alive in the first place, with the explosion, you should have been dead."

Shinji looked up at him, "What happened after?"

"Your mother continued her work, despite our protests; she even let others test on her willingly. Many had gained the Geo-stigma and were slowly dying from it. The results were…chaotic."

Shinji looked back down at the pictures and went through a few before he stopped at the sight of a grotesque twisted, black form of something that appeared human, filled from head to toe with bullet holes. It had white long hair and appeared female, its mouth full of jagged sharp teeth.

"The Geo-stigma changed humans into monsters. We had no choice but to put them down. Your mother was determined to stop this. Taking cells from the first Angel, Adam, that we had extracted during its cryogenic sleep, we created a substance that could regenerate the cells, we called it LCL or "Link Connection Liquid", it provided a link between our systems and that of the Angels. Your mother was the first to test it."

Kozo looked sorrowfully, "I did not go to the testing facility as I had other priorities, but from what your father said, it was…" he grit his teeth and clutched his fists, "Yui was shot down, she became one of those monsters and, against your father's cries, they killed her."

The pictures fell form Shinji's fingers, as those words hit him like a tornado ripping his body apart to shreds.

"My…mother…was-"

"After that…well, you father became focused on finding you and when he did he put you in my care and disappeared."

Shinji frowned, "Wait, find me? What do you mean?"

Kozo said nothing and turned away from the teen.

Shinji growled, raging at the fact that the man would not answer him, sighing he calmed down, "And Nerv, that woman, who are they?"

"Nerv…"

Shinji turned to find Kaworu standing behind him.

"Nerv is a military agency under the control of SEELE who control the Angels and Cherubs, they also spread the Geo-Stigma around. That woman was an operative. Form the orange blood I can only guess that she is an experiment."

Kozo sighed and looked weary, "To think Katsuragi's daughter would…."

"Wait, experiment?"

"SEELE enjoys toying with their men, they inject the LCL into their systems to make them stronger, faster, and more aggressive, you saw how she kept getting back up didn't you, even if that kick could have clearly snapped her neck?"

Shinji had seen it, Kaworu's kick had been so powerful he was sure that the woman would not get back up, but she just stood and charged like nothing had happened.

"SEELE makes their men think that they are fighting to save the planet from the Angels, but in reality, it is an Angel controlling them."

"Who?"

Kozo turned to Shinji, "Lilith. Your father left to pursue her and SEELE, to stop the Third Impact."

• • •

"Well, don't you look like shit, have fun Misato?"

She opened her eyes to find herself in familiar labs. Turning her head towards the direction of the voice she saw a blonde haired woman sitting at a computer desk, typing away at her laptop. Looking around he saw that she was hooked to several machines.

"How-?"

"You fainted after the injection; thankfully we retrieved you in time to give you a second dose. The fight with 005 took more out of you then you thought."

Misato looked from her and lifted up her arm, staring at the black blotches smearing her skin.

"They've gotten bigger."

"We got to you as soon as we could, wouldn't want you turning into an 'Apostle' now would we?"

The blonde stood and walked over to her, hands in the pockets of her white lab coat.

"What's the status on Ikari?"

"005 has put up his A.T Field, we're unable to track them."

Misato sighed, Damn!"

The blonde chuckled, "Don't worry, sooner or later he has to let it down."

"Fat chance, 005 is too strong for that."

The blonde just shrugged.

Misato stared up at the ceiling for a moment, "Ritsuko?"

"Hmmm?"

"Thanks for…saving me."

Ritsuko grinned, "No problem."

• • •

"This is most unfortunate."

"The Instrumentality must go on as planned, Ikari's offspring must be dealt with, under no circumstance are it and 005 to become one."

"Have we located Gendo Ikari yet?"

"No, but it will not be long, the man is a father after all, he holds the weakness of human kind to come to the need of their offspring."

"Then we will capture them at once."

"Send out 004, it will be excellent for the job."

• • •

Ritsuko walked through the halls of the glass barrier cells only to stop in front of one, over head was a plate the read 004. Staring in without a speck of emotion she looked at the girl sitting in side on the floor. She had long burgundy hair and wore glasses over dull green eyes. She was obviously nude underneath the strait jacket she wore, a bit in her mouth.

"Its time for your mission, 004."

The girl jerked her head a bit before moving to look at her. Her eyes nor brimming to the rim with insane, sadistic pleasure.

• • •

"And what are you?"

Kaworu looked up, his humming ceasing, and stared at Shinji who stood over him. They were outside by the harbor, the moon shining its luminous light over them.

"How you matched that woman blow for blow, and nearly took off her head, how you flew down from a bridge, that sword you just held out of no where!"

Kaworu looked some more before grinning, "And what are you Shinji Ikari, to float down from such a height and survive, that shield that protected you? What are we all?"

Shinji gasped, taking a step back form the silver haired teen.

"We are known as human but what really makes us human, our emotions, our morals, the way we look, but can you say that anyone is human when they can do what no other cannot, but they still act the same as you or me? What, How, why, when, where, who…so many questions to be answered but there is no definite answer for any of this. We just seek it and make the answer our selves. You are Shinji Ikari, because you were born as such, as I am Kaworu Nagisa because I was born as such. The moon hangs over us in balance because she must."

Shinji frowned, speechless as to what to say. He watched as the teen stood and approached him. Shinji backed away, eyes never leaving Kaworu's.

"What make you who you are Shinji Ikari, tell me, define yourself."

Warning!/BoyxBoy Scene/Warning!

Shinji flinched as Kaworu set his hands upon his face. He could only stand there as the teen moved closer, his hypnotic crimson eyes soothing the tension in the brunette's body, relaxing him. He opened his mouth to the inviting lips, not even understanding what he was doing. He moaned, reaching up to wrap his arms around the teen's neck as he felt Kaworu hug him close. It felt so right, their tongues massaging each other, the dominating feel of Kaworu's body, the way he felt as those hands caressed his sides.

Faintly he felt warmth protrude from his back and moaned at the sensation. He wanted this, he needed it. He nearly cried out as Kaworu attacked his neck, suckling it, biting it, caressing it, running his tongue along his skin, sending shiver or pleasure through him. His hands reached up to massaged partially hardened nipples through Shinji's shirt, pinching at them. They danced to the silk hands, hardening at their skilled command.

Opening his eyes the hazel color melted into crimson, his hair whipping about his a non existent wind as it was bleached a snowy white. Kaworu's hair did the same, his eyes shockingly bright as Shinji's were. An orange neon light then flickered from their back and small featherless neon orange wings sprouted. The boys moaned as Kaworu moved a hand to glide it over Shinji's clothed erection.

End of BoyxBoy Scene

BANG!

Shinji screamed at the sound and watched in horror as Kaworu fell to the ground, a gunshot wound bleeding form his side. Turning Shinji found his Uncle standing with a Jericho 941 in his hand, glaring at the wounded teen.

"Stay away from him, 005."

Kaworu hissed at the man, crimson slit pupils glaring at him. The man cocked the gun and aimed it at Kaworu's head.

"Don't' make me say it again."

Kaworu became silent, his features becoming normal, Shinji's doing to same as the brunette felt a loss of connection somehow.

"Shinji, you are to stay away from Kaworu from now on."

Shinji frowned, "Why?" he did not want to, it felt so right to be held by the teen. It felt like perfection.

"That's an order, Shinji!"

Shinji cringed at the man's shout. Kozo looked from him to Kaworu sneering as he saw the boy stood without looking the least bit hurt. He put the gun away and walked back into the warehouse. Shinji looked from the man's retreating form to Kaworu, shocked to see the boy standing.

"Are you-"

Kaworu smiled at him before lifting up his shirt to show unblemished skin coated in blood, "I'm fine."

Shinji was skeptical but accepted it, hesitant to even touch the area, "Why did he call you 005?"

Kaworu's smile fell, Shinji looked at him for an answer and only received a caress on his cheek, followed by a kiss before the boy walked away.

I love it when you get inspiration for a story! And here is Chapter 3, it flowed so naturally from my brain that i am so proud of myself! Well, please read and review and tell me what you think!

Sayonara!