Time Skip - 1 Year

"Water Style: Water Clone Jutsu!"

Two identical clones made of pure water formed at Naruto's feet. All three holding kunai as they sprinted off towards Shisui. The lone Uchiha grinning widely as he easily dispatched both clones with a soft kick to the chest. He sidestepped Naruto's attempt to kick his stomach, taking advantage of Naruto's new opening he grabbed the blondes leg throwing him over his back. Naruto wasted no time performing a quick kawarimi appearing to Shisui's left side. The Uchiha bent his back backwards sending a sweep kick under Naruto's leg making the blonde fall to the floor. Shisui moved his body until he was atop Naruto, arm around his neck in a choke hold. The whole time his goofy grin never leaving his face, as he watched the blonde struggle under his weight.

"That was better. Your differently improving my little turtle." Naruto scowled, his face pressed up against the first floor attempting to gare at his sensei. "I said stop calling me that" Shisui only smiled as he pushed Naruto deeper into the ground. "And honestly turtle-chan, a genjutsu on an Uchiha? I've taught you better than that." Naruto's body then sunk into the ground, turning into blades of grass while Shisui used his signature jutsu, the Shunshin technique; or the Body Flicker. In a second he was about 4 feet away his elbow extended out seemingly hitting air. Suddenly Naruto's body appeared from what looked like nowhere and flew across the training ground and impacted with the nearest tree. He spat out a small amount Silvia, leaving a pretty decent sized dent in the tree. Naruto gave an audible groan. His arm coming up and rubbing his chest, his ribs felt like crap. He looked up to see his sensei kneeling down at him. His arms resting on his knees as he grinned at Naruto

"I'm proud that you managed to get that genjutsu down so fast. That was a pretty advanced jutsu."

Naruto gave a silly grin, in the past year since the sudden falling out of his family he had been spending more and more time with Shisui. The young anbu managed to take some time off of his shinobi duties to help train Naruto, and while he was more experienced that the highest academy student, he was only slightly a genin level shinobi. "It wasn't to bad. The only real issue was understanding how the jutsu worked." he spoke as he rubbed the back of his neck. A mannerism he picked up by hanging around with Shisui.

The 'Hidden Person' genjutsu, mainly used for assassination missions. It was a C rank genjutsu that focused more on the fundamentals of genjutsu itself. It wasn't just how good your chakra control was, it was understanding how the cerebral nervous system works in order to manipulate your opponents 5 major senses. Any shinobi could perform genjutsu, it was how precise your chakra control was to really make the illusion convincing. Shisui gave a nod of his head, watching Naruto get to his feet.

"So Naruto how's the academy going? Learn anything yet?"

Shisui said as he and Naruto started there trek back to the village. Naruto shrugged his shoulders, his eyes flashing suddenly with annoyance. It's been about a year now that Naruto was enrolled in the shinobi academy along with his siblings, and all the clan heirs from the major clans in the village. And like usual, no one batted an eyelash in his direction. Even the teacher of his class was shocked when he read his name, apparently thinking there was only two Namikaze children. And speaking of the two Namikaze children. Last year, during the first real fight he had with his family and hitting Natsu right between the eyes with his jutsu. The next morning he was forced to apologize to his brother and sister. While Natsu got off scot free, no punishment, no scolding. Just an imaginary slap on the wrist while Naruto was grounded for a two weeks, with only a limited amount of food at his disposal. He wasn't allowed to go out to eat with them (not like they would have noticed anyway), or go shopping.

"I haven't learned anything at all! All we have been doing is stupid leaning exercises. Stuff we all already know about!" Naruto huffed angrily as he crossed his arms over his chest earning a laugh from Shisui. The Uchiha looked down at Naruto, his smile turning melancholic as he listened to the blonde ramble on. "I haven't prepared you at all have I, Naruto-kun"

Shisui thought to himself. The Uchiha clan was on thin ice with the Konoha council. At being the prime suspect of the Kyuubi no Kitsunes sudden appearance in the center of Konoha, being stated that multiple cases have been showing up giving evidence that the Kyuubi did in fact show signs of the Sharingan, potentially an ocular genjutsu while attacking. The Uchiha was forced to give up 35% of all their clans compound as well as the official closing of the Uchiha Military Police. Not only that but they were now getting taxed heavily, about 9% more than the Hyuuga clan. While Shisui did feel targeted, since he was a holder of the Uchiha name. He was slightly appreciative that the clan was starting to get put in check. They have become to arrogant and self centered for his tastes. The once well beloved clan was slowly losing its respectable name. Shisui gave a small sigh. Leaning his head upwards, staring into the darkening skies. The clan was now in the mists of planning on a coup d'etat to overthrow Konoha no Sato. Shisui knew the clan didn't like the sudden changes to their lifestyle, but this. This was going to far. To hungry for power.

"I have to be careful. This will determine everything for Konoha."

Naruto met out a loud groan. Seeing his large house come into view. Shisui suddenly snapped back to reality. He also looked at the giant house with a frown, while he respected the Yondaime for his strength and love for the village, Shisui could barely look at the man without a sudden urge of outrage. Just how pitiful is a man and his family to basically abandoned one of their own children in obvious favoritism. Shisui reached into his pouch and pulled out a large black and blue scroll. Naruto looked at the scroll in curiosity.

"Naruto I want you to have this scroll. But I want you to promise me one thing."

Naruto quickly snapped to attention, Shisui's voice has taken a serious edge. His eyes morphed into his sharingan looking at our blonde hero. "Anything Shisui-niisan."

"Only open this scroll when something bad happens to me."

Naruto felt his eyes go wide, stunned at what his nii-san just said. A look of fear etching across his face. He looked at Shisui, his eyes becoming glossy "Shisui-niisan what's going on, are you in trouble?"

Shisui kept his serious gaze up but his eyes flashed with uneasiness. He bent down and placed the scroll inside Naruto's hands. Using his larger ones to grasp the scroll and making Naruto push it to his chest. "No of course I'm not in trouble." he shook his head, looking Naruto dead in the eye "Just promise me."

Naruto slowly nodded his head, the grip on the scroll now tightening considerably. "I promise." Shisui gave a grateful smile. He deactivated his sharingan and gave Naruto an affectionate head rub. "See? That wasn't so hard was it turtle-chan?" Naruto scowled at Shishu, "I said stop calling me that!"

Shisui let out a loud laugh, instrinctly moving to the side dodging a punch. "What? It's not my fault I found you playing with a few turtles at the training ground the other day."

"I hope you can forgive me someday Naruto"

"I don't even like turtles that much!"

Later that day - 11:30 PM

"But Fugaku-sama-"

"My decision is final Shisui!"

The voice belonged to Fugaku Uchiha, the current clan head of the Uchiha clan. And the one who has instructed the coup d'etat of Konoha. He tried his best to sway the Uchiha elder but every attempt had failed miserably. Shisui clenched his hands, his sharingan active. "Shisui you are on of the most gifted Uchiha the clan has ever produced. You shouldn't be wasting your potential on this village." Fugaku spoke, his voice laced with venom. The mere thought of Konoha causing resentment. "You should be proud, knowing full well that the Uchiha name with soon be restored to its former glory."

Shisui turned his back to the clan elder, he schooled his emotions. His face going blank as his sharingan started to spin widely, looking in all directions. "It's you guys that have destroyed the Uchiha name. Not Konoha."

"When it is happening Fugaku-sama."

Fugaku smiled, happy to hear that Shisui was willing to participate. Not that he had much of a choice in the matter, the whole clan was already preparing for the take over. Fugaku walked over to Shisui and rested his hand on his shoulder. "In two days time. At the stroke of midnight." Shisui gave a nod, pushing Fugaku's hand off his shoulder. He gave a look around, Uchiha guards everywhere. Any sudden chakra spike that emitted from his eyes would surely cause a panic. His plan had failed

"This is quite an honor Shisui. Remember where your allegiance lies."

Without warning he performed his signature technique, Shinsine. Moving at incredibly high speeds and appearing just outside the Uchiha compound in a small forest area, leaning on the border to the Forest of death. Scowling to himself he unsheathed his sword, and with a grunt he sliced the neatest tree nearly in half. He breathed a weary sigh as he looked up in the dark sky. The clan was really going through with it, he observed the clan for weeks. He spied on them and tried his best to stop the elders and there coup d'etat. Shisui frowned, while he knew the Uchiha were cursed with the obsession of power, the cycle of hatred burned stronger in the Uchiha more so than ever since Madara. Though Shisui harbored no love for the Uchiha since there turn of utter hatred consumed them. It was still his family, a family he was born into, raised into and taught. But this last year, the word family left a bitter taste in his mouth.

"A family?"

Witnessing first hand what has happened to Naruto, seeing the downfall of the Uchiha clan with his own two eyes. It wasn't the blood that connected you as family. No, it was the people you cared about, the people you swore to protect. The Uchiha weren't his family, the Hokage weren't his family, he only had himself, his best friend and Naruto. Suddenly the breaking of a twig echoed through the small first clearing. Shisui acted quickly grabbing his sword as an old man walked out of a bush. The man was old, his hair still full on black as he worse a oversized white shirt with a green cape covering the right side of his body. He had bandages covering this right eye and an 'X' scar on his chin, he looked over at Shisui. The Uchiha glaring over at him.

"Danzo...What are you doing here."

The now identified Danzo said nothing, he continued his walk until there were about 20 feet apart. The elder having his eyes closed, fully aware he was facing off against an Uchiha, especially Shisui. Danzo gave out a soft hum before shaking his head slowly.

"I know you would have failed the mission Shisui-san."

Shisui glared over at Danzo, he clicked his tongue and tightened the grip around his sword. "I have not failed my mission, I still have one day till the missions deadline."

"The mission was simple, target Fugaku Uchiha with your ultimate genjutsu that only you contained. You were the key to stopping the coup d'etat." Danzo said, his voice eerily calm. "Now sadly I have been forced to play my hands into this mess that you Uchiha have caused."

Shisui narrowed his eyes at the elder. "You said you would let me handle it." he said giving Danzo a dirty look "You promised-"

"I only promised to leave that Namikaze child alone. I merely had a safety precaution if you failed."

Shisui glared over at Danzo, wanting to wipe that calm look right off his face. Danzo had always been a mystery to him. Not much was known about the old war hawk. Only he was one of the Sandaime Hokage's teammate and losing the title of Hokage twice. Having a supposed disbanded anbu squad that called themselves 'Root'. Rumors were that they worked under the Hokage, but there true loyalty lies with Danzo. "Kotoamatsukami. Indeed a powerful genjutsu." Danzo spoke, Shisui widened his eyes in shock.

"How do you-"

Without warning Danzo was in front of Shisui, a kunai lodged in his side. Shisui left in momentarily shock had no time to react to the bandaged hand coming up to his face. Shishu let out a scream of agony as he fell to the ground, his hand around his left eye. Blood leaking down his face as he looked up to see the imposing figure of Danzo. A look of utter shock on Shisui's face as he watched the man pull the bandages off his face. Showing a now three tomoe sharingan.

"You- you monster!"

He yelled removing the kunai from his side, not feeling the pain from the sudden adrenaline boost that has kicked in. He threw the kunai over at Danzo, forcing him to dodge. Shisui wasted no time performing his shunshin appearing behind Danzo sending a swift kick to the elders ribcage. Danzo smiled wickedly, 'his' new sharingan seeing the kick and intercepting it with his own arm. Forming one handed hand seals he sucked in a bunch of air "Wind Style: Great Breakthrough!"

Shisui preformed another shunshin dodging the jutsu just in time. Danzo turned around just in time to duck under Shisui's sword. Shisui expecting Danzo to dodge swung his sword into the ground. Pushing off the hilt and increasing his speed, Shisui turned and kicked Danzo in the stomach sending him flying into a large oak tree. Grabbing the hilt of his sword, Shisui pulled it out of the ground and after another quick shunshin rushed after Danzo.

Danzo snorted at Shisui, flipping a kunai over his hand, squeezing the handle of his kunai he swung his backwards. With a loud clang, Shisui's sword was blocked by Danzo's kunai. Shisui gritted his teeth at the man, applying more pressure to his sword. Danzo sneered, trying his best to hold Shisui back from the sudden pressure. "You idiot! This is the last time I let you order people around. I'll make sure you die by my hands today, you damn thief!"

Danzo let out a loud shriek of laughter, his stolen sharingan now changing shape. The three tomoe now a 4 shaped thick windmill kunai, his eyes open with sudden glee. "You are the fool! You would think I would just start a battle with you for no reason?!" Shisui gritted his teeth in disgust of the man, suddenly knocking the kunai out of his hands and bringing the sword down, and slicing Danzo's right arm. Danzo gave no indication of being hurt, he smiled wide, his bandaged hand coming up and grabbing the sword by the blade. Shisui looked over at Danzo in shock "This guy is fucking crazy!"

"You still think you are the only one I gave a mission too. Baka! Your whole talk with Fugaku, with so many Uchiha guards around. The whole clan seemingly asleep. I knew you would have failed, that's why right now." He said forcing the blade out of his arm, no blood leaked from his hand as Shisui widened his now lone Sharingan eye in anger. Appalled by Danzo's sudden hysteria. Danzo and Shisui looked up to see a sudden pillar of smoke. Shisui almost lost the grip on his sword, a sudden burst of shock entered his veins as Danzo laughed again, his hand coming up to hide his face, only showing the new shape of his sharingan. "Mission details; Uchiha Itachi, slaughter the Uchiha clan starting at 11 PM. No survivors. Effectively stopping the coup d'etat." his laughing getting louder, borderline maniacal.

Shisui felt his anger grow, his fists going tight as he looked over at Danzo, in pure, utter hatred. Shisui charged, both unaware of the side thumping of footsteps running their way. Danzo smiled, his cracked expression wide with glee as he aimed a kunai at the Uchiha

"I'll fucking kill you!"

"Shisui-niisan!"

Shisui suddenly faltered, his sudden anger turning into fear as he watched a familiar blonde race over to him. Shisui suddenly lost his footing, the pain that he got inflicted on him at the beginning now started to resurface in plain agony. He tumbled forward, watching the kunai come down at him. As Naruto finally reached him.

"NIISAN!"

…

…...

...

All there that was seen was blood.

Naruto fell to the ground, a loud death screeching scream came from his mouth as he held both hands up to his face. Blood leaked down Naruto's hands as he gave a loud cry of pain. Shisui hurry and raced over to the down blonde, grabbing his shoulders as a few tears leaked from the Uchiha's lone eye.

"Naruto! Naruto are you okay!"

Naruto couldn't even shake his head, the pain was excruciating, his eye was on fire. The blondes tears mixing with his blood making it burn even more. "It hurts so much!" Naruto cried.

"Niisan make it stop please."

Shisui felt his heart shatter, all thoughts about the Uchiha gone from his mind. Now only occupied with Naruto. Shisui gently grabbed Naruto's hands away from his face, Naruto whimpered in pain as the sudden cold air now blew into his newly formed wound. He gave our a sudden cry, Shisui went pale, a small piece of Naruto's left eye rolled from underneath his hand. Rolling across the grass, a small sliver of his blue iris mixed with his blood stared right back at Shisui. Shisui felt sick to his stomach, he softly rested Naruto's head against his chest, making sure not to irritate the wound even more.

Shisui heard the soft sudden footsteps and he turned his head to see Danzo looking at him. The bandages back over his face covering his right side once again. All previous signs of insanity now gone from his facial expressions, now replaced with the diplomatic elder everyone knew. He stayed silent for a moment, kunai still drawn as he walked over until he was behind him. The cold steel resting across the warm neck of Shisui. The Uchiha shut his lone eye, the cries of Naruto echoing throughout the clearing as he clenched Shisui's bloody shirt.

"If its it's any consolation. There was no other way this could have gone Shisui-san."

Shisui shook his head sadly, his free hand softly caressing Naruto's blonde hair. "You are wrong Danzo. There's always another way. It's just if your willing to find it."

Danzo shut his eyes, "Like promised. I will leave the Namikaze child alone."

Shisui gave a thankful smile. His lone eye turning upside into a U shape. He gave a soft sigh, awaiting death. Suddenly the cold steel left his neck, a loud smack was heard as Danzo was suddenly gone. A array of trees now tumbling down with a trail of dust going deeper into the forest. Shisui looked upwards, only to see a sudden masked figure. He wore a long solid dark blue trench coat with a wave on the front. His mask was a soft pink, only showing a head of straight brown hair.

The figures tilted his head at the two people on the first floor, he looked around. Traces of blood were everywhere. Trees were destroyed and signs of jutsu were most definitely used. The masked figure bent down until he was eye level with Shisui, the Uchiha looked on in shock and worry. He tightened his grip around Naruto, making him whimper again. An action that didn't go unnoticed.

"What happened to the little one here?"

His voice was surprisingly soft, coming off more feminine but still holding that masculine tone. Shisui looked down at Naruto in sadness, "He jumped in front of a kunai for me. It completely destroyed his eye." he spoke, letting out a sudden cough in pain. The masked man nodded, he looked back at the young child. He was unconscious, no doubt collapsing from the sudden pain. He pushed his mask to the side, showing a lovely shade of pastel pink eyes catching Shisui's attention. "It seems you care very much of this Namikaze child." Shisui stiffened, but was held back by the masked man waving his hand.

"Don't worry, it doesn't matter to me where he came from." the man spoke silently putting Shisui as ease. The Uchiha let out another cough as the pink eyed man reached into his pouch and pulling out a small sized urne. He placed it on the forest floor and looked back at the Uchiha. He motioned for Shisui to lay the boy down. After a few moment of Shisui not complying the man sighed.

"I'm merely gonna heal him as best I can."

Shisui reluctantly agreed laying Naruto flat on his back. The masked man lifted the boys shirt up, slowly grabbing some ink and writing on Naruto's stomach. Shisui questioned the man in between coughs about the man's method and he looked at him.

"It's a seal array."

Shisui raised in eyebrow at that, but stayed silent. The man grabbed the urne and motioned Shisui to put his hands out and grab ahold. The man whispered a small sentence to Shisui making his eyes go wide. His lone onyx eye looking at the man in utter shock. "But how, how do you-"

"It's the group I am in. Atarashī. A group formed to fight back against the Akatsuki. That is why." he said now pointing at the urne now resting in Shisui's hand."I have that."

Shisui silently nodded his head, not quite understanding the whole situation. He looked back at the prone figure of Naruto. His left eye entirely gone as the blood finally dried around around his eye socket. His body felt weak, he knew he wouldn't survive this, he already lost more blood that he should have. Even so, he felt a content smile from on his face. He pulled one of his free hand upwards and around his remaining eye. The masked man watched him in silent surprise. With a sudden grunt, and a wet crunching noise, Shisui held out his now closed palm to the cloaked man. The small smile never leaning his face.

"If you wouldn't mind, please give him my eye. It's the least I can do."

The man stared at the Uchiha, he's never met an Uchiha that would willingly give his sharingan to someone. He gave a hum in thought, coming to Konoha was a good idea after all. "Of course."

Shisui offered another kind smile, taking the eye from Shisui's palm and opening the urne and placing it on the Naruto's stomach. He watched the Uchiha fall to the side, his body now resting directly next to Naruto. The eyeless man reached his arm out, feeling the soft locks on blonde hair he caressed many times before. "I love you turtle-chan. You were the baby brother I always wanted." Shisui said, a laugh escaping his mouth "Make sure to train hard, always eat your vegetables even if you don't like them." he spoke, his voice getting quieter "Please live your life the way you want it, make friends, be happy with who you are. And please flush after using the bathroom. You have to get into the habit of doing that." he said, his smile growing wider as he felt his life start to fade.

"There was so much more I wanted to teach you Naruto. If only I wasn't weak, i would still be here, able to protect you." he said, as imaginary tears cascaded down his eye sockets. He gave a sudden chuckle, his grip fighting as much as it could of his blonde hair. His eyes shut and his head rolling back.

"Heh. Maybe your not my little brother, but the son I always dreamed of having."

The masked man closed his eyes, mourning for the sudden shinobi that has just passed away. Very few shinobi were like that, to have such a heart of gold. The cloaked figure sighed, glad to see the man die with a smile on his face.

Weaving through handeals he smacked his open palm on Naruto's gare chest.

"Secret Sealing Art: Reverse The Seal!"

Sudden a bright blue light flashed across the area, blinding anyone in a near mile vicinity as Naruto's body hunched upwards and a loud scream tore through his throat. This last for what seemed like years, but was merely 5 minutes the light went seemingly vanished. The sealing arrays now completely gone from Naruto's stomach. The cloaked man returned his mask to cover the rest of his face and wiped a bead of sweat off his brow. He looked back at the boy, the urne now empty and the lid hanging open on the grass.

The masked man gave a sigh as he walked over to the new deceased Uchiha. After a quick fire jutsu the body of Uchiha Shisui was no more. The masked man respected that particular Uchiha, he would make sure his body didn't get tampered with after death. Suddenly 3 chakra signatures alerted the masked man, with a quick shunshin he left the area almost instantly. As three Konoha Shinobi came down only to find Naruto's body laying across what seemed like a battlefield.

The Shinobi world was soon gonna know who Naruto Namikaze is. They were gonna receive a wakeup call that no one was expecting.