Naruto, Lilli, and Musashi sat in one of the academy classrooms separated and alone under anbu guard. Their seating was evenly distanced. They could not look at each other do to facing out from their triangle shape seating arrangement. When forced into the room they were told not to talk or communicate . The girls had upon being pushed into the room started crying and sniffling sometime loudly but mostly quietly. Naruto alternatively had stayed quiet with his head down on the desk. Even if it looked like he was covering his face so nobody would see him cry. What he was doing was trying to cover his smile and laughter from the hidden communication that Lilli and Musashi were having about some clan heads and anbu. Naruto then started to think back the training he and the girls had gone through.

Flashback

Finding that children's book and others had opened Naruto's world up to many new things. He had spent every waking moment trying to learn to read and understand what was in the books. It was around the 6 month mark when he was at the point that he was not opening the dictionary he had found every 2 minutes. Just able to get by without major problems. He could not understand why it did not help when he was in the main village. When he got to that point he went to his storage points for some other books that covered different things. What he found was stuff on farming, hunting, and survival. He would end up keeping the hunting and survival books on or near his person at all times.

Having those two books allowed Naruto to go from one good meal a day to four or five smaller, but perfect for his metabolism, meals a day. They thought he had ungodly energy before now it was 10 times more. Now that his body was not running on fumes it could reapply the energy to areas of neglect like his brain and growth. Naruto's brain now being feed the correct amount of needed materials began to reconnect or in some places make new functions other than the ones he had. Now that he was not only running on base functions he could recall more, think on harder problems, and see things that are going on around him easier. Where he normally would get bored or lose focus easy. By the time Naruto was 75% health from the 20% he started out at he began to notice pictures and diagrams on the walls if looked at in the correct lighting. He before only thought it was the work of shadows. Following a few of the pictures on what to do in certain areas he could find flush cabinet doors that held more items of interest.

In one of the cabinets he received the book and scrolls on how he would live his life. In the cabinet he found a journal. The first words read from it had galvanized Naruto into changing his life.

To whom that has found this journal,

I make my final request as a dead man. That either yourself or someone close to you take up my legacy. In this hidden cabinet is all the training manuals I could find on the old ways. I have had my doubts about how things are changing over the years. The clans are not staying in the shadows anymore…

So seeing it was someone's last wish Naruto was going to try his hardest to take up the man's legacy. Reading the manuals he notices that the training was for being a ninja. Some of it did not seem right like he never remembers seeing anyone use a bow and arrow. The manual had said you had to work up from killing form distance to slowly graduate to killing with your hands.

Musashi and Lilli joining him in learning how to be a ninja the old way had been a great boon. First it was Lilli finding out and showing Naruto that he was actually reading a different language. Her and Musashi would trade off with Naruto daily for two hours of learning to read and writing. They would teach him what he needed to know for the village and he would teach this new one.

The book Naruto found on chakra uses and application opened many ways to modify their equipment to deter use in the old way. Seals was another way as well. The best thing they found was the contact and silence seals. Placing both on arrows made devastating effects especially went used for area effect jutsu. Say you load an arrow with a fireball jutsu you would aim at the tree between you and your target. Because you are not attacking the target you have no killing intent for the target to scan for. You shoot the tree and hit it, to which the contact seal fires off blasting firewall in the direction the arrow was going torching the tree and anything behind it. It was small things you could do to change the battlefield in you favor the old way pushed.

Getting their chakra release was a bad day for Naruto. It would have been fine if he was still in as bad of shape as he was before getting good food. The problem happen because certain individuals placed restriction seals on him as a baby. The fox's chakra to be filtered into his body during all this time was being restricted to only 1% of the 1% the Main seal was meant to allow threw. There ended up being a massive back flow buildup ready to find any way to get free. So when the churning in charge sent chakra through his system to activate it the dam broke and … well the best way to describe it… they were lucky nobody was in the room, near the outside wall of the classroom, or the next 100 meters. It was like a shape charge went off. The chuunin was lucky he had seen the flash of the seal failing or he would have died in the explosion. You may think 'how did they find out that there was a seal and what seal type?' Well if you looked at the wall that surrounds the academy grounds you would see that seal and all the other unauthorized seals burned into it. Naruto was hospitalized for four weeks even with his healing. All the bones in his chest shattered. Muscle and skin over his upper body shredded he would have bled out if not for the anbu being on standby in case he had a demonic chakra flare up.

Many people died that day. Everybody that had a hand on sealing Naruto had been sent to T & I. By the time it was all over, a little over 300 people (3/4 of root) died. The practice of sealing people no matter why was put on hold for over a year and all seals had to be registered. There had to be a way to remove the seal or it was not allowed to be used. Some clans argued about it but one reminder of what could've happened stopped them flat.

When Naruto was healthy enough to leave he was released. The doctors had let him go thinking all was good. But things were not what they seemed. When checked they only checked if the repairs were stable. What the did not check was how the repairs were done. You see Naruto was in the beginning stages of puberty which in itself was not so bad. But Kyuubi had never been through a male puberty only female. Kyuubi had not learned the Naruto's male body from repairing it yet. So with Naruto in critical did what it knew. Unknown to the doctors or Naruto, his upper body was repaired as if it was female do to only knowing the makeup of the female body at the time. So at first there was no notice of the change but with both male and female hormones flushing though his body things went weird fast. Muscle growth was as a male but he had softened up with a layer of fat to take a female shape but more muscular. Naruto's face had smoothed out to a more feminine facial features to the point he could pass as either male or female. When his breast started to grow none of them had thought anything of it until two weeks in he was about an B cup and still growing. By time they had stopped he ended up full C going on D cup Lilli ranted and raved for days when he had past her in cup size. To hide the growth of his breast he at first wear baby clothes but once he was a B or more with the help of Lilli and Musashi used breast wraps. Later on he like the other two moved to a corset with seals to hide the shape and fact he had breast. Also, a jacket or vest to break up the shape.

At the beginning of the changes Naruto started to shy away from Lilli and Musashi but the two would have none of that. They had finally convinced him that no matter what changes he went through they would never leave him. Then joked that now that he was part female he was there boyfriend and girlfriend all in one. That night and nightly afterwards they all would sleep in the same bed together. It was not long after that point that Musashi had cornered one of her elder kunoichi friends to get the hand signs for the pregnancy jutsu. The group became sexually active. Most would say they may be too young but what they had read made them realized life was short in the field they were going to.

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Training training training that's all they did but not today. This day was the first time to put it all to work. The three are using the two month time off from the academy to start practicing their field. It did not take long for them to find the first of many bandit groups. The group they had found was small. Only 10 members strong, this group was smart in their way of doing things. They never killed or raped anyone. Only stole things never more that 10% of what a caravan had on them. This had an effect of not getting in the sites of the law. So they were so not ready for the three to come in to eliminate them. The bandit group had been sitting around the campfire talking about their next job they were thinking of doing. Not knowing that this was going to be the last few seconds of life. The first sign of trouble was the arrival of arrows in the foreheads of three bandits. But before anyone had reacted to it three more had the same thing happen to them. That had them jump up but that did not save the next three from getting an arrow to the head either. The last guy tried to run but he received an arrow to each knee from the back dropping him face first to the ground. Before he could react three sets of legs landed next to him.

"This one will be yours." said a male voice. He then felt a hand on the back then his world went black. Lilli cried having to kill that way. She did not feel it when using the bow. When using the bow it was like hunting but to have to kill with a knife up close was different. To actually feel the life leave her target was something she could not take. Musashi had walked up behind Lilli to surround her in a hug. Naruto had held Lilli's face with his hands. "I know it hurts, But this is the life we live. As long as it hurts it shows we are human. Now Musashi will stay with you while I check the things that they had. What he found was six months supply of food, small supply of weaponry, a about half a million in gems and loose money. Sealing all of it up, They were off to the next target. The next 4 sets of targets were taken out that same way taking turns finishing the last one. By the end of the first week, they had killed over 100 bandits. The next set of targets were going to be inside some villages. Rapist, drug dealers, and corrupt lawmen. The first target was a dealer they found dealing opium. This kill was a soft kill with a poison scratch from Musashi's nails. The kill was smooth, while the target was in the market area she walked by him and scratched his hand when she bumped him. It took 20 minutes for the drug to start affecting the man. The man started to feel the affects he headed to his home. The three followed him to his home. Once there they found he had six guards all of which were easy to get rid of, civilians with a weapon each. Using gloves so not to leave any fingerprints searched the entire home from top to basement. The search unveiled much, significant documents that showed where and who the drugs came from, loads of money, and something they did not expect to find. Again they sealed everything but the drugs. Once done staged the home as if the guards had been fighting which started the fire.

By the end of the two month time off, in the areas around Konohagakure many drug dealers disappeared, 5 warehouses burned down, 15 small bandit groups eliminated, and 10 lawmakers either dead or found out to be corrupt. Many orphanages found many months of food left at their door. Whenever the information lead to anything large they would drop off the information in a place that an anbu agent would find it. After finding out the type of money could be found out there and the experience gained. It was planned to do this every time the academy was on break. It also was a test bed for new equipment.

12321

The last year of the academy was the first time that they tried to take on real ninja. One time they were out they came by a bounty hunter's hut. Musashi had entered, being she did look older, picked up a bingo book. Using the book they hunted down one of the E ranked missing-nin from Konohagakure. They found the ninja in a bar looking for a good time. Musashi looking as adult that she does was the one that went in after redressing to look the part. It was a quick pick up for Musashi, when she got him to follow her out of the bar. They snatched him up when he passed the alley that Naruto and Lilli were waiting in. The fact that his bounty was for him alive was the only reason they did not take him from a distance. The speed and brutality of the take down stopped the missing nin. When snatched and thrown down Naruto having learned from the book on chakra uses pulsed his chakra randomly to disrupt any attempt to use jutsu to escape. Lilli smashed his hands to break them just in case he got away. And Musashi put him to sleep by drugging him. He was then stripped of everything and dropped of at the bounty office. Over the year 20 more E ranked ninja were caught.

Flashback no jutsu end

Naruto's train of thought was broken when the door of the room opened letting the Hokage, academy head, and the A.N.B.U. leader. The look on the homages face had set off warning signals in Naruto's head that what they did or said would determine the rest of their lives. So while setting up he sent out a coded message to get them all on the same page.

"We are here to determine if you three should be allowed to continue testing to become ninja or kick you out of the program altogether for injuring a fellow student the way you did." said the Hokage. Naruto was about to blow his top but stopped himself. Just to see what else would come out of the Hokage's mouth. "I'm most disappointed in the three of you. Your actions have caused one of our most promising young ninja to lose an eye. Not only that but from a clan with a eye blood limit which he is the last loyal member of." That last bit had set both Musashi and Lilli off but again Naruto's coded message held them back.

"Are you done? So I could speak in our defense Hokage sama." Naruto said calm and concise. The hokage and anbu leader had flinched. Naruto never called anyone by their title or with honorifics. The hokage had known his relationship with Naruto had been strained over the last few years but they were still friendly. For the young man to switch to his title and then add honorifics he knew things had just gone bad.

Tiger had information that the hokage did not have on the three junior ninja in front of him. He knew that the three had been hunting E rank missing nin over the last year. The last two captures they did he had Cat follow them to report on how they did the jobs. Cat had reported if it was not for luck on having known who the target was beforehand she would not of tracked them before during or after the job. It was like they knew when they were being watched so they would move to a different location. As if they could sense chakra usage near them. Then the report noted on take down of the target they disabled the hands so there would be no hand signs. The last thing that she had noted was no chakra usage was detected. Tiger thought about the information for a few seconds then just to check he released a minuscule amount of chakra. Almost immediately all three twitched. Naruto sat up, Musashi's head turned, and Lilli's hair seemed to puff out like a cat for a split second. Now knowing what he did he knew that the three were even better than what he expected. So he had to jump in before things got out of hand. "I have a question for the three of you. There is no right or wrong answer just your answer. Do any of you three have any regrets from what has happened?" ask Tiger.

As if in stereo all three answered "No we would have done it again." with their head held high.

The hokage was about to go off but Tiger had held up his hand and walked up to Naruto reaching into his pocket. After pulling out the object he dropped it on the desk in front of Naruto. "I expect the first five at the drop off location in two weeks or we will have a problem. Everything you need is in this book now get out of my face." He waved them off. Not two seconds later the three were gone. In there place was the chakra cuffs and shackles put on them. "As I thought." he said out loud. "I knew there was more to them. Cat you are their watcher and contact make sure they know who you are. And if they have any questions they can go to you. They only answer to you nobody else make that clear. Chain of command is as Hunter. Now go." All there was is a sound of fabric and then nothing. Turning to the hokage "I just saved you from losing possibly the greatest hunter-nin squad ever to have been put together. Those three have been hunting for over one year that we can prove but have suspicion it may be around three years. Only hunting ninja the last year. The reason I say they may be the best. Remember Rhino and how he lost it? Well he was put in the bingo book as a E class missing nin to keep hunter nin from going after him to only get killed by him. Those three punched his ticket last month after debriefing him before putting him down permanently. He said and I quote 'I never saw it coming. One minute all is good the next my hands are broken and all escape jutsu won't work then black. When I wake up I'm in anbu hands.' Knowing what I do and what Cat has reported, the fact that the Uchiha only lost an eye was a miracle. They are now junior hunter nin until the test I just gave is over. At which time they will become full hunter nin. That was the first reason for what I did. The other was to get them out of sight and mind, if they had stayed in the village once it gets out what happened and who did it. The ninja and civilians would take shots at them both verbally and physically. The death toll would be large before things would settle down. And finally when was the last time you could be in the same room with a jinchuuriki and not feel or sense their chakra at all? I bet you didn't even feel the chakra spike I did but they all did."

12321

Musashi led the group into the shop they had found out Tenten worked at to pick up their fully functional equipment that was on order. Tenten had been salivating over some designs they made and modifications wanted to regular items. The fact that most of the items were either lined or made of chakra metal had her head spin. She also knew that their clothes had chakra metal woven into them. Once that all the equipment was picked up they left the shop after each of them gave the girl a goodbye kiss and grope making the girl blush badly. The group had taken Tenten's virginity as a graduation gift last year and was always there for the girl if she had an problem that needed to be taken care of. It was something she did at least once every two weeks sometimes more. Guaranteed to be by when she went on a mission that lasted more than four days with the teammates she had. She also had no problem with Naruto's status being someone who like the feminine looking men.

When they got home in the old section they found a cat masked anbu waiting for them.

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That's right they won't be a part of the teams. How will the village react to the damaging of the Uchiha. R&R plz