Disclaimer: I own nothing everything belongs to Sega.

Summary: Okay in this story Shadow will take Sonic's place as hero although he will be happier and Maria will be alive and Sonic will take Shadow's place and Sonic's a girl so if you don't like gender benders (or whatever you call them) don't read this story.

Okay this is my third fanfic and please review and has a lot of chapters and also there are a few Sonic games I haven't played and I also haven't read the comics or the comics with Sally and the others in it but I have watched the show with Sally in it and I don't like her so she and anyone else in the comics with her in it and the show will not be in here so there will be none of those characters there will only be the characters from Sonic Adventure DX, Sonic Adventure 2 Battle, Sonic Heroes, There may be a small chance the Babylon Rouges may be in it, There also may be Silver, and Blaze (but don't count on Silver being in it a lot for I hate him so sorry for those who like Silver) Okay anyway I'll shut up and get the story started.

Oh also here are the couples Shadonic (Shadow and Female Sonic), Knuxouge (Knuckles and Rouge), Taiream (Tails and Cream), and one-side ShadAmy (Shadow and Amy) and 4 of my OCs and now I will shut up and get the story started now and also two OCs of mine will take Prof. Gerald (actually Prof. Gerald won't even exist in this story) and Maria's places on the ARK and I will have a few other of my OCs in this.

This " used when talking and underlined words will be thinking


*Sonic's POV*

That Eggman's a coward he just ran away "Project: Sonic I mean Sonic" I whirl around and standing there is the President and the G.U.N commander "What?" I growl "Sonic would you like to join G.U.N?" I was confused they wanted me to join the very thing that killed Mack years ago "Why are you asking?" I crossed my arms "We need you" "How do I know this isn't a trap?" "It's not" the President said "We would love to have you with your powers and such and you'd be working with Rouge the bat" I sighed "And if I say no?" "Then you'll be put in cyro sleep again" I sighed again "Fine" "Okay Agent Sonic" the President put a hand out for me to shake and I shook it and thought to myself Might as well.

*End of Sonic's POV*

*Shadow's POV*

Well Sonic is now working for G.U.N I've never trusted them anyway but wait hold on a second Rouge works for them!? that's new to me "Also we came because we have a mission for Agent Rouge" "Well what is it Commander?" "There's a terrorist group trying to get rid of the President I want you and Agent Sonic to go after them well if your both up for the mission" "I'm up for it Commander" "So am I but I need to get something real quick" Sonic used chaos control and disappeared and then reappeared and was wearing two rings on her ankles and wrists "What are those?" the President asked "There inhibitor rings if I wear them I won't wear out as fast in battle" "Alright so were do we find these terrorists?" "Here" the Commander handed Rouge a map and some stuff and then handed her a gun "Keep that with you just in case" and Rouge took it and then he handed one to Sonic and she took it "Now go" and the President and Commander left and then Rouge and Sonic left.

*End of Shadow's POV*

*Rouge's POV*

I'm surprised the Commander said he'd be getting me a new partner since the last one died in a mission last year because of Eggman and I know Sonic can handle herself and her and I are on our way to the terrorists' base "Okay so the plan is to find the terrorists and then get rid of them got it?" I asked Sonic "I know the plan Rouge you don't have to keep telling me" "Sorry Sunshine" "Don't call me Sunshine!" "Okay okay calm down" "Humph" I only have one question for the Commander and that's why in the world did you have to team me up with her I mean she's not exactly the happiest person on the planet "We're here" Sonic said and stopped and we went in and got rid of all of the terrorists I called the Commander "Mission done sir" "Wow that fast?" the Commander replied in surprise "Yeah it must because I have a partner with me this time" "Alright that's all you both have to do today you can go home and do whatever" I hung up "So Sonic do you have anywhere to stay for the night?" "No" "You can stay with me" "Really?" "Yeah sure come on follow me" I started to fly towards my house and Sonic was following me and when we go there I gave her the tour and showed her to her room and then I told her not to destroy the house while I was asleep and then I went to my room and went to sleep.

*End of Rouge's POV*

*Sonic's POV*

I'm at Rouge's house I'm in the room she gave me to stay in for how long I don't how so I lay down on the bed I'm kinda tired so I go to sleep.

*End of Sonic's POV*

*Maria's POV*

I hope we're gonna see Sonic more often I like her although her personality has to change but I don't think Amy likes her though.

*End of Maria's POV*

*Amy's POV*

I can't believe G.U.N they should have just killed her not asked her to join them I hate her!

*End of Amy's POV*

*Tails' POV*

I really like Sonic she's nice although she acts a little mean but she's nice I can tell her and Amy don't like each other.

*End of Tails' POV*

*Cream's POV*

I really like Ms. Sonic she's really nice but she is also a little mean and very stubborn but her being mean I can understand because of her past but everything else I just don't understand.

*End of Cream's POV*

*Silver's POV*

That Sonic girl is nice but she has chaos powers she must be really dangerous and also one thing I don't get is that the G.U.N commander called her Project: Sonic before calling her by her name that's the part I don't get.

*End of Silver's POV*

*Blaze's POV*
I like that blue hedgehog girl although I can tell Amy hates her because I bet Amy thinks Sonic stole Shadow from her but to tell you the truth I don't think Shadow ever liked Amy anyway.

*End of Blaze's POV*

*Shadow's POV*

I kinda like Sonic she's nice, stubborn, and can kick butt and a little mean and I don't think I'd get her angry.

*End of Shadow's POV*

To be continued


I hope you like it and also Amy will not be alone through the whole story she will be paired up with one of my characters but until she is she'll be trying to get Shadow to love her and please review and tell me what you think.