Thank you for reading I do hope you enjoyed my little take of season 6 Flydye

Title: A Message in Time 4/4

Author: Flydye8

Pairings: Eleven/Amy, River/Amy, and another companion

Rating: PG-13

Disclaimer: I don't own Doctor Who I never will (sighs in sadness)

Summary: To save the Doctor from Area 51, River enlists Amy's help to save him but it may come at a cost, for the timelines are in flux all around them.

Author's Note: I have been keeping an eye on all the possible spoilers for Season 6 of Doctor Who. I have read and listen to the possible storylines. As I read and listened a plot bunny appeared to me via my muses and has demanded I write this story. So without any more delay here is the conclusion of "A Message in Time"

River ran toward the TARDIS as an explosion erupted behind her, momentarily knocking her to the ground. Picking herself up quickly, she sprinted the last few feet to the blue wooden doors, closing the doors behind her another explosion rocked the area. Running up to the center console River quickly moved the TARDIS to where the Doctor and Amy were waiting for her.

In the air shaft Amy eyed the fans wearily as two more bolts were severed by the weight of the blades, which were now pointing downwards, held by one final bolt. Amy looked around frantically for anything she could use shield them, but nothing around them could keep them safe from harm.

Getting up on her feet she tried to drag the Doctor closer to the wall but after moving him only inches she knew she would not be able to move him much further. Gathering the Doctor in her arms she held him tightly, kissed his forehead and whispered, "No, matter what happens, I will always love you my raggedy old Doctor."

Hearing the last bolt break Amy leaned over the Doctor, preparing herself for the impact of the blade when the familiar sound of the TARDIS echoed in the enclosed space. As the outer shell of the TARDIS surrounded them a loud clang rung out, as the blade impacted with the top of the police box.

Amy breathed a sigh of relief then chastised, "Why is it that you and the Doctor always wait till the last minute to save the day?"

River just chuckled, "Because it is more fun that way sweetie.

Brianne paced the ground apprehensively waiting for the other TARDIS to materialize, checking her watch for the seemed to be the millionth time, she was about to go look for River and the others when the wind around her picked up and the sound of her father's TARDIS echoed around her.

She breathed a sigh of relief as the familiar blue box appeared in front of her, soon after River poked her head out the doors, "Come on Brianne we need your help moving the Doctor."

Seeing her father on the floor next to Amy, Brianne rushed to his side, "Oh dad what have they done to you?"

Amy looked at the young women and answered sympathetically, "He will be okay Brianne, they didn't do anything, except cause him a lot of fatigue. But according to River we need to get him to the med-bay just to be sure."

Kneeling at the Doctor's feet, River ordered, "I will grab his feet as each of you grabs an arm."

Between the three of them, they somehow moved the Doctor into the med bay and onto the examining bed. River immediately set up the instruments to scan the Doctor as he slept, turning toward the others she stated, "The TARDIS will let us know if anything changes. I don't know about you, but I could use a good cup of coffee."

"Nope I think I will pass, I want to stay here with the Doctor." Amy stated as she grabbed the Doctor's hand and sat by his side."

"Very well, what about you Brianne?" River inquired.

Not trusting herself to be in the same room as Amy, Brianne replied, "Yes, I think I will join you the Doctor is in good hands."

Amy watched as the two women exited the med bay then brought her attention back to the Doctor, "Sleep well my Time Lord I will be here when you wake up."

Brianne and River sat at the kitchen table sharing stories about what happened to each of them after they separated at Area 51.

Brianne sat back in her chair as she finished and asked, "So when do you think my father will regenerate into the person I saw in the recording?"

"You know I can't tell you that sweetie, but I will tell you that the man you saw is the one that I traveled with."

"You know I don't think I will ever get use to this timey-whimey stuff."

Reaching across the table, River took Brianne's hand, "You will understand the timey-whimey stuff eventually I promise."

Brianne tilted her head to the side as the TARDIS hummed persistently in her mind, "Dad is waking up we better head back to the med bay."

Amy was not sure when she fell asleep on the Doctor's chest but as his body moved under her she lifted her head and found him staring at her fondly, "Hello Amelia Pond."

"Hello Doctor, I am glad to see you awake. How are you feeling?"

"Much better thanks to some restorative sleep."

"Good but you still look like an old man with all those whiskers." Amy teased.

Reaching up he stroked his facial hair, "Didn't you know Pond that whiskers are cool."

Laughing she hugged him tightly; "You have no idea how glad I am to hear you say that."

"Were you worried about me Amy?" he said as he touched her hair.

Pulling back from him she replied, "Yeah I was worried about you, my Doctor"

"Well there was no need to worry, Time Lord's are hard to keep down, but you know what I want right now."

"What is that Doctor?"

"I want a shower and a good cup of tea."

"If that is what you want, then that is what you get. Come on let me help you to the loo so you can get cleaned up."

Placing his arm around her shoulder she was about to lift him when he stopped her, "Amy what year did River and Brianne pick you up from?"

"Why do you need to know?"

"Please Amy, tell me what year."

"Well the year for me is 2011, I think it is around September but I am not sure. You know how it is it can be a bit confusing traveling about the universes."

The Doctor pulled away from Amy, "You should not be helping me up it is not safe for you or our…"

River interrupted as she walked into the room with Brianne close behind, "Doctor, spoilers." Moving to his side River helped him out of the bed and into the bathroom, "Let me help you get cleaned up then we can bring Amy back to her TARDIS before Rory and the other you wake up."

The Doctor nodded as he allowed River to assist him, leaving Brianne with Amy.

Amy looked at the other young women and asked with a broken sob, "What the hell is going on? What are you guys not telling me?"

Brianne stepped closer to Amy and grabbed her hands and touched Amy's forehead with hers, "Listen, I know that not knowing is hard, but if we are not careful what is meant to happen won't"

As the tears fell down her cheeks Amy gasped, "But time can be re-written."

Brianne choked back her own tears, "Yes, it can but the timeline you are in right now needs to stay the same…my existence depends on it."

Pulling away Amy looked into Brianne's eyes, "Why does your existence depend on it."

"I have already said to much, come on let us get you some tea and wait for the Doctor to finish. Then we will get you home."

The Doctor and River walked into the kitchen area as Amy and Brianne were finishing their tea.

Amy looked at the Doctor and gave her nod of approval, "Now that is the Doctor that I know, you still look a bit older but I guess that is to be expected since you are from the future."

He looked at her sadly, "Well some things age a man a bit more than others."

River looked at her watch, "We really need to get you back Amy otherwise your Doctor is going to come searching for you."

Standing up Amy put her cup in the sink, "Yeah I think it is time to get back, all the secrets you guys are keeping from me is very frustrating."

Grabbing Amy's hand the Doctor led her through the ship and into the brisk night air. Once outside the ship the Doctor moved her away from the others and embraced her firmly, "I am going to miss you Amelia Pond."

"I wouldn't say that Doctor, you are about to see me."

Laughing he stated, "Well you are right on that point." Then as he placed his forehead against hers he continued soberly, "I want you to promise me something."

"Sure, anything." Amy replied.

"Promise me that whatever happens in the next few months that you will be honest with me about everything."

"I am always honest with you Doctor."

"I am serious Amelia, promise me." He insisted.

"Okay, okay I promise."

"Good, Good, thank you for your promise." Leaning down he kissed her lips, "And never forget that I will always love you."

Pulling away from him she smiled, "And the same goes for me, my raggedy Doctor."

Brianne stepped forward and embraced Amy, "I will see you again very soon, but till then stay safe and well."

"I will." Amy replied with a smile.

"Come on Amy we need to get you home." River stated then turned toward the Doctor, "And I will see you again soon."

"I am looking forward to it River." The Doctor replied.

"Oh Doctor, you never look forward to seeing me." River replied with her hands on her hips, "But thank you for saying you will."

The Doctor grabbed Brianne's hand as they watched Amy and River walk away, "How are you doing my daughter."

With tears in her eyes Brianne replied, "Oh Dad, considering that I just met my mum who died while giving birth to me, I am doing okay. How are you doing it must have been hard to see her?"

"It is hard to see her again, but I think I am doing okay as well." Turning toward his daughter he continued, "So where should we go next Brianne Amelia Pond."

Pulling her Dad toward the infant TARDIS, Brianne smiled, "I think we need to go somewhere so that my TARDIS can finish growing. Wait till you see her, she is gorgeous, and you know what is even better, her chameleon circuit is working."

"Well of course it is working; I was the one that gave them the specs on how to build it."

"Well if you know how to fix it why don't you fix the chameleon circuit on your ship?"

Smiling down at her he replied, "Because police boxes are cool."

The Doctor woke up around the same time Rory did, moving to the console he scanned the surrounding area for Amy.

In the middle of his search Amy walked in, "Hello, my boys I am home."

Hurrying down the steps the Doctor embraced his companion, "Are you okay did that vile woman hurt you."

"Doctor I am fine, just a bit tired."

"Why are you tired Amy." Rory asked as he embraced his wife.

Amy just smiled, "Spoilers."

A few weeks later Amy looked at the stick in her hand and read the results, smiling she clapped her hands together and went in search of the Doctor so that he could confirm the results.

She found him under the console of his TARDIS, pulling him out Amy stated, "I need your help."

"What do you need my help with?"

"Come on we need to go to the med bay." dragging him by the arm down the passageway.

Once in the sterile looking room the Doctor asked, "So what is this all about Pond?"

Pulling put the pregnancy test out she replied, "This says I am pregnant and with all this high tech medical equipment I thought you could confirm it for me before I tell Rory."

Smiling happily the Doctor clapped his hands, "Well lay down on the bed and we will take a look of this bundle of joy."

Turning on the ultrasound equipment the Doctor put some blue gel on Amy's stomach, and placed the readout arm on her tummy. Moving a bit back and forth across her tummy, the Doctor found the heartbeat of the baby turning up the volume with a smile.

Soon the sound of the baby's heart echoed in the room, moving the arm slightly to the left the heartbeat changed and the smile on the Doctor's face changed to disbelief.

Seeing the change Amy asked, "What is it Doctor? Is the baby okay?"

Removing the arm from Amy's tummy the Doctor stated somberly, "Yes the baby is perfectly fine for a Gallifreyan."

"What do you mean for a Gallifreyan?" Amy asked.

Sitting on the bed next to her the Doctor explained, "I am so sorry, the baby you are carrying is not Rory's it is mine."

Sitting up Amy caressed the Doctor's face, "Why are you sorry I am not. The night we spent together was magical and look," Pointing to the image on the ultrasound machine, "We created a beautiful life."

"Oh Amy don't you see; I have ruined any chance of happiness for you."

"Do you regret making love to me?" Amy asked apprehensively.

Cupping her face with his hands placing his forehead against the Doctor whispered, "Never, Amelia, never you are right it was magical."

Amy smiled now understanding why Brianne, River, and the other Doctor were so secretive, "Our daughter is going to be beautiful, smart and brilliant just like just like her father and I couldn't be happier."

"How do you know it will be a girl?"

"Because, I have met her and she is all the things I have mentioned and more." Amy stated proudly.

"You have met her. How? Wait is she ginger like you?"

"I met her when at Area 51 and yes, she is ginger like me but she is very much like her father." Amy stated.

Sighing the Doctor asked, "What are we going to do? How are we going to tell Rory?"

Feeling a bit apprehensive at the thought of telling Rory, Amy shook it off as she leaned toward the Doctor, kissing him before responding, "I don't know but we will manage somehow, my Doctor."

Returning her kiss the Doctor smiled on her lips, "You know, this changes everything and it will be difficult."

"Yes, it does but I think it will be a good change."

"Yes, very good, very good indeed." The Doctor replied as he kissed Amy's lips once again.