A/N: Where's Rose? And who was that Captain Jack look-a-like. Haha read and find out.

Disclaimer: I do not own the Doctor, the TARDIS, Captain Jack, Gwen Cooper or Rose Tyler. Just me and my dreams, and one-year-old John. Enjoy

The Doctor sighed as he set his one-year-old son John, down in his playpen. He had just managed to stop him from crying, but he still had tears in his eyes. The Doctor leant down and kissed John on the cheek and smiled at his son. John smiled slightly up at his dad. Tears started to well up in the Doctor's eyes as he realised again how much he looked like Rose.

It had been a year. A whole year, and the Doctor had searched from every corner of the universe, looking for Rose. And as he stared down at his son, he feared that he would have to grow up without his mother.

Rose.

Another tear slipped down his cheek as he turned from his son and walked to the TARDIS controls, just the same as everyday for the last year. He had searched through every planet, moon and galaxy he could think of. But he still couldn't find them. Rose had gone missing a few moments before Gwen Cooper had. Jack had called him, yelling at him about seeing himself stealing his girlfriend. Jack had been a little surprised when the Doctor had arrived with John in his arms.

Flashback

Jack looked up from where he sat as the TARDIS materialized in front of him. Jack hastily whipped away the tears on his cheeks. He quickly stood up as the TARDIS doors and the Doctor stepped out, his cheeks equally as wet and a blonde haired baby boy in his arms. Jack scrubbed at his cheeks as he looked at the Doctor, a look of surprise on his face.

"Where did you steal him from?" Jack asked as he laughed quietly. The Doctor gave him a dumb-founded look before he looked down at the baby.

"Steal him? I didn't steal him. He's my son." The Doctor said as Jack laughed even louder.

"What?" The Doctor asked as Jack stopped laughing and pounded him on the shoulder.

"You a dad. A son. With who?" Jack said as he burst out laughing. It seemed that he was in shock.

"Rose." The Doctor said simply and Jack automatically stopped laughing. "And this is John. And he has my last name, Smith. It's silent."

"John Smith? Typical." Jack laughed.

"What? Rose named him." The Doctor said. "Now get in the TARDIS. We have to find them."

End Flashback

The Doctor sighed as he remembered. He started to move slowly around the TARDIS controls, which was uncommon for the Doctor. They hadn't been able to find the girls, and the Doctor had slowly sunk into depression. He was only there for his son, who needed him. As the Doctor scanned the universe again- for the umpteenth time- he finally understood why he couldn't find them. Once the scan had come up empty, again, the Doctor raced around the controls. Just like old days. He fiddled with this and that, pushed and pulled levers and pressed buttons. He looked down at his handy work as the TARDIS jumped into motion and the Doctor was flung to the ground. A happy laugh was ripped from the Doctor's throat as he jumped to his feet and pulled a mobile phone from his suit pants. The Doctor quickly dialled a number and waited for it to answer.

"Hello?" A voice called out to him and the Doctor smiled.

Jackie-Boy, oh have I got a surprise for you." The Doctor yelled as a gleeful laugh greeted him.
"You found them?" Jack's voice asked.

"Yes, yes I did." The Doctor said as he continued to smile.

"But, where?" Jack asked.

"Alternate universe." The Doctor said. "Get ready. I'm about to land."

The TARDIS landed with a rock and a thud as the door was opened. The Doctor looked up and smiled at Jack. Jack jumped in and slammed the doors in his wake. He raced over to where John sat laughing his little head off. He did seem to like Jack. But how could the Doctor blame him.

"Hey John, hows my little nephew going?" Jack asked as he picked John up. John babbled something that was incoherent to anyone that wasn't the Doctor, who laughed.

"What? What did he say?" Jack asked, seen, as he couldn't understand.

"He wants you to slam the doors again. Apparently he likes the noise. Though that doesn't surprise me, because he does live in the TARDIS."

Jack laughed as he spun John around, who laughed gleefully. The Doctor chuckled as he started on the coordinates. Jack quickly gripped onto something as the TARDIS lurched into motion and they were off to the alternate universe. They both laughed, as they were glad that they had finally found them, after an entire year. The Doctor felt the TARDIS struggled as it tried to get past the barrier separating their world from the alternate one. But with one last push, it made it through. The Doctor waited for the TARDIS to land before he scanned for Rose and Gwen. He waited several moments before an image came up. It was a large dark building that seemed to be surrounded by dark shadows. The words "TORCHWOOD" were in dark letters, right at the top. The Doctor motioned for Jack to come over, and he stepped to the side to allow Jack to see the image.

"There are coordinates." Jack said as he sighed a sigh of relief. The Doctor looked at them for a moment before he started jumping around the controls again. Jack sat back in the jump seat as he watched the Doctor run around the TARDIS.

"We've almost found John. Your daddy and Uncle Jack are going to find mum and Aunty Gwen." Jack said as the Doctor looked up and smiled.

"Mummy?" John muttered.

Jack looked up at the Doctor.

"He doesn't know Rose. She was taken when he was only a couple days old. He wasn't old enough to remember her as his mother." The Doctor said as he looked down at the controls. He wanted his son to know his mother. To know that Rose was his mother. But he knew that it would take time. And he also knew that he was going to be closer to him and Jack as he grew up.

"Yeah, John. Mummy." Jack said as he kissed his blonde head. The Doctor watched as John smiled at his uncle. He was right, no matter what; Jack was a part of their family. Jack had been there for him when he hadn't been able to be there for himself. Jack smiled down at the boy as he brushed his blonde hair out of his eyes. John stretched his chubby arms around Jack's neck and hugged him. A tear slipped down Jack's cheek as the TARDIS thudded to a halt.

"Here we go,' The Doctor said in a forlorn voice. "Lets go find Mummy and Aunty Gwen."

Jack stood up and didn't try to hide the tears; he learned long ago not to fight his feelings. The Doctor looked over at Jack with the same wet cheeks. Then the Doctor suddenly grinned as he ducked down and picked up an object that was lying on the ground. Jack laughed when he noticed what it was. The Doctor slid one of his arms through the holes in the pouch and reached out for John. Jack smiled as he carefully helped the Doctor positioned John properly before he buckled him tightly to the Doctor's chest. The Doctor smiled down at his son as John shook his arms and legs in the air.

"Lead the way, Jack." The Doctor said as he motioned to the TARDIS doors. Jack frowned as he looked at the doors, before he shoo his head and headed towards the doors. The Doctor followed him and almost ran into him when he walked out of the open door. Jack had stopped right outside of the door and was staring in shock at the sight in front of him.

Everything was dark. The sky was dark and gloomy, and there was no sight of the sun. Though maybe this alternate universe didn't have a sun. But the building in front of them just seemed, sinister and creepy. Definitely a place Alternate Jack would take Rose and Gwen.

A frown settled on the Doctors face as he finally pulled the TARDIS door closed and stepped around Jack. As he stepped past him, thee Doctor tapped Jack on the shoulder gently.

"Come on, Jack. Standing there isn't going to do any of us any good." The Doctor said as John cooed happily to himself. Jack nodded as the Doctor started to walk towards the large doors. The Doctor had already expected them to be locked, so he pulled his Sonic-Screwdriver from his pocket and pointed it at the metal doors. They clicked open and the Doctor dropped his hand and opened the door enough to enter. He turned and waved to Jack, who quickly followed. The Doctor entered the AU Torchwood with Jack right behind him, and he was met by a blaring noise.

"ALIEN ALERT! ALIEN ALERT! ATTENTION! ALIEN ALERT!"

The Doctor winced as he jumped in further and ran for the other side of the large room. He didn't loo back to see if Jack was following, he just kept on running. He heard the furious noise of guards following them. The Doctor and Jack burst through another set of metal doors and the Doctor turned and locked them before any guards could follow them.

The Doctor turned back to look at the room they had just entered, and it was surprisingly quiet and white. The Doctor frowned as he started to scan the room.

"That way!" He yelled as he turned towards the right and headed for a door. All the Doctor could hear was the sounds of their feat pounding on the white marble floor, the sound of their breathing as they fought for every breath and the angry yells and bangs coming from the opposite side of the metal doors behind them. The Doctor reached the door first and he quickly turned the door and tugged. The door opened easily and the Doctor stepped into what seemed to be a dungeon. He looked everywhere, but when he came up with nothing, he pointed his Sonic-Screwdriver forward again and continued to run in the direction it sent him in. As they continued to run from dungeon after dungeon, the Doctor was fighting a loosing battle with the possibility that the girls were dead. He tried to believe that they were alive, but his head continued to tell him that it had been a year and there was only a small chance that they were still alive.

As his ears filled with the sound of his feet hitting the ground, the Doctor hardly noticed that tears were running down his cheeks. John had started to cry and the sound echoed through the dungeon they were running. The Doctor suddenly stopped and Jack ran painfully hard into his back.

"What are you doing?" Jack asked as the Doctor turned and looked at him with defeat clear in his eyes.

"John's crying." The Doctor said as more tears fell from his eyes. John wailed as Jack stepped closer to them.

"Doctor, I am not afraid to slap you if you don't get a handle of yourself. Somewhere in his god-forsaken building are the girls. And we have to find them. So snap out of it."

"That's if they are even still alive." The Doctor said as the hand flung out and slapped him hard on the cheek. The noise echoed.

"Ow!" The Doctor said as he lifted a hand to rub at his burning cheek.

"ENOUGH! Get a handle of yourself, or another slap is coming your way." Jack yelled as he looked at the Doctor with warning eyes. The Doctor nodded as he quickly shushed John before he turned away from Jack and continued to run to the next door.

The Doctor burst through the door and surprised the person who was standing in the middle of what seemed to be a cave. The Doctor shook his head at the odd rooms and focused on the familiar figure. Jack ran in after the Doctor and looked in shock at the man.

"Well there I am." Jack said, his voice thick with sarcasm. The Doctor turned and glared at Jack, the real one, before he turned back to AU Jack.

"Where are they?!" The Doctor yelled. A look of fake confusion came across AU Jack's face.

"Who?" AU Jack sung. "Oh, you mean blondie and the brunette. I think I may have lost them."

The Doctor may have been against fighting, but he almost jumped on him. He would have if Jack hadn't of gotten there first. The Doctor flinched as jack hit AU Jack in the face. The Doctor shrugged his shoulders and sighed before he reached forward and dragged Jack off of his clone.

"Tell us the truth, Jack, because we know you are lying to us." The Doctor snarled.

"Jack? The name is Jackson. And I really think I did loose them. I'm quite insane and am very prone at loosing my belongings." AU Jack said happily. The manic grin that had haunted the Doctor for the last year appeared again and nothing could stop the Doctor from swinging out and punching Jackson in the mouth. Blood poured from his split lip and the Doctor was shocked to see that it was black.

"What are you?" The Doctor asked as Jackson grinned again.

"Crazy!" Jackson said as he flicked his fingers and a door opened at the other end of the room and two figures were herded into the cave-room. They were filthy and covered in bruises. The Doctor and Jack both cried out when they figured out who they were. Rose looked up at the cry and she gasped at the sight of the two men.

"Doctor?!" She yelled as her sight dropped down to John. "Oh my god, John!"

Dun Dun Dunnn. Big cliff-hanger. Sorry to leave it there, major case of writer's block. More to come in chapter 8. So keep your eyes peeled and keep on reading. And please review, it helps.