The Atlantis Project

Rating: K+

Disclaimer: Okay I do not own any of the characters they are owned by MGM, and DC Comics

Parings: Stargate Atlantis: Elizabeth/John, Teyla/Kanann, Jennifer/Ronon, and Katie/Rodney

Smallville: Chloe/Clark, Lois/Oliver, Tess/Lex, Lana/ Pete, and mentions of Lois/Clark, Chloe/Oliver

Summary: A mysterious ships lands in the fields of Smallville, Kansas. Martha Kent discovers the ship and takes the mysterious stranger back to the farm. This mysterious stranger is Dr. Elizabeth Weir who disappeared in the Pegasus Galaxy however she has a tie to the Kent her and Martha were college roommates. Bonding with Martha Kent again she meets Clark Kent who is now Superman in Metropolis. One more thing Dr. Elizabeth Weir is the aunt of Chloe Sullivan who is now working on Atlantis off of the coast of San Francisco, California. Chloe Sullivan left the life she used to live behind to put the past in the past. The return of her aunt may lead her back to her old life when she needs it the most.

The Atlantis Project Part 9

Chapter 9: Facing the IOA

Part A

John and Elizabeth had just been finishing packing up for the trip to Washington DC so Elizabeth could face the IOA and tell them about her ordeal. Now in the Gateroom they were just about to head out not before the gate activated and Clark and Chloe had returned. Elizabeth spotted Chloe and gave her a big hug and then Chloe had to inquire.

Chloe: Aunt Elizabeth what with the bags?

Elizabeth: Well it time for me to face the IOA.

Chloe: Good luck and I know what it is like to face them.

(Chloe noticed the ring as Elizabeth pulled back to grab her bags next to John.)

Elizabeth: I know that look yes John and I are engaged.

Chloe: Since when?

Elizabeth: It happened before the replicators attacked and we were going to tell our friends but the whole mess happened.

Chloe: I get it my unexpected marriage got you thinking of it again.

John: You're right about that Chloe but we don't have time to get into details because we better head out.

(Chloe could tell Elizabeth was about to protest but John silenced her with a kiss. Chloe just smiled and then her own husband grabbed her and kissed her the same way. Then John spoke after pulling away.)

John: Elizabeth I know you don't like them as much as I do but they have to see you are not a threat.

Elizabeth: I rather know what the wedding of Lois and Oliver was like?

Clark: We will tell you when you get back. It was interesting to say the least.

Chloe: Good luck.

(Then Elizabeth and John left. Afterwards Clark asked Chloe something.)

Clark: So what is so scary about the IOA?

Chloe: You know how Lex and Tess were it a bunch of people like that.

Clark: Oh now I get it speaking of which you need to know something.

Chloe: And what would that be?

Clark: That Lex and Tess got married last year. To top that all off they are the golden couple.

Chloe: I thought something was familiar about the new first couple. This is not good for Elizabeth and John when they go to Washington DC.

Clark: I agree but I sure they can handle it. Besides we got to focus on other things like you meteor power coming back.

Chloe: True they can handle it and about the meteor power I think it kind of works like the ancient gene that is used to operate this city. Here let me show you something.

(Chloe got out of his embrace but still holding his hand she headed toward the ancient room.)

Several hours' later Clark and Chloe came out discovering that the ancients are like the Kryptonians. In fact they discovered some Kryptonians ended up marrying some ancients on the Kryptonian rite of passage. Now they discover one of the families is related to Chloe that why her power is acting like the gene. Meanwhile John and Elizabeth decided to spend the night the Cheyenne Mountain complex before heading to Washington DC.

The next morning at SGC John and Elizabeth headed out to the mess hall for breakfast. Once they made it they noticed Sam, Jack and Megan O'Neill waiting for them. So they grabbed some food and headed over to join the family. Once they sat down they Jack spoke to them.

Jack: Dr. Weir I hear congratulations are in order.

Sam: Yeah I hear that too.

Elizabeth: Before you say anything yes it is true John and I are engaged in fact we were engaged before I got captured by the replicators.

Sam: Carson's funeral I take it.

Elizabeth: Yes it was his funeral.

John: Yeah and we were going tell everyone before the replicator incident and willing to take anything the IOA would dish out.

Jack: Yeah the IOA was not happy when we ended up getting married. So we are willing to stand up for you two if needs be.

Elizabeth: Thanks we might need it. Talking about marriage guess who now is married?

Sam: No they did not get married.

Elizabeth: Yes they did.

Jack: Who the heck is they?

Elizabeth: Sorry Jack you remember Clark Kent who came back with me. Well it just so happens that Clark and my niece Chloe Sullivan got married.

Sam: What I thought they were not talking.

Elizabeth: They weren't but shortly after we came it seems that Chloe was doing some research on a Quantum Mirror. Well they were pulled through the Quantum Mirror to a parallel universe that just so happens their counterparts were married and so they had to get married to not rise suspicion. If I know my niece she pulled so strings to make it legal in this reality too.

(Just then Daniel and Vala Jackson came to join them. Vala was surprised to see Elizabeth.)
Vala: So it is true you are back Elizabeth.

Elizabeth: Yeah I am back and it nice to see you Vala again.

Vala: What about the nanties in your system and what is with the ring?

Elizabeth: The nanities are gone and the ring John and I are engaged. I hear that you and Daniel got married.

Daniel: Yeah Vala and I got married a year ago. So John how is Chloe?

John: Married.

Daniel: Really when?

John: Well it seems that Elizabeth and Chloe are related and the guest that came back with Elizabeth is an old friend of hers.

Elizabeth: They had a falling out that is why Chloe went to get away from her life. Anyway they got into a situation with the Quantum Mirror they had to get married.

Vala: So the marriage is just not legal.

Elizabeth: Oh it is legal all right Chloe had some strings pulled with all your counterparts making it legal. Anyway it looks like they are really happy making this work.

Vala: Well good for her I always liked her. So you got any pictures of this husband of hers?

(Elizabeth pulled out her wallet and showed Vala his picture. Vala could not believe how lucky Chloe was with a handsome huband but then again she got lucky with Daniel.)

They sat around and talked some before Elizabeth and John had to head to the airport for Washington. Also they had discovered that a new president was elected wondering if that had any effect on the IOA. Before they even left for the airport Jack and Sam arranged for them to get married so the IOA would have a tougher time pulling them apart. Then afterwards they left the short ceremony John and Elizabeth said goodbye heading out to the airport.

Three hours they arrived only to be ambushed by the president and his security. They were blindfolded taken back into a hidden room in the White House waiting to face the new first family. One hour later Lex and Tess entered to face the new prisoners.

Lex: Take off the blindfolds of our guests.

(They were taken off and John was first to speak.)

John: Guest so that what you call your prisoners.

Lex: Well I heard about your reputation Lt. Colonel John Sheppard and you just about as naïve as an old friend of mine.

John: Well your ethics I can see he is not a friend anymore.

(Just then Elizabeth spoke up.)

Elizabeth: So I take it you are the new first family.

Tess: We are we know all about you Dr. Elizabeth Weir and you remind me of someone.

Elizabeth: That must me you know my niece Chloe Sullivan-Kent.

Tess: Kent as in she married to Clark Kent.

Elizabeth: Yes they are married and I got to witness it myself.

Lex: Tess I thought you told me you killed Watchtower with Checkmate.

Tess: I thought I did but you knew her longer than me she was always a sneaky one.

(With their bickering they did not notice that John and Elizabeth got out of their restraints turning the tables on them. Meanwhile back on Atlantis Woolsey had just gotten word some trouble in Washington DC.)

Richard: General O'Neill what is going on?

Jack: It seems we have a situation with the first family and John and Elizabeth.

Richard: What type of situation?

Jack: Well it seems that John and Elizabeth are being held for ransom. We need you to call Clark and Chloe to the control room so we can talk to them.

(Richard did as he asked calling Chloe over the comlink and Chloe responded getting her husband. Five minutes later they made into Richard's office wondering what is going on.)

Chloe: Richard what seems to be the problem?

Richard: Chloe we have a situation involving Elizabeth and John being held for ransom.

Clark: Who is holding them in ransom?

Richard: The new president and his wife Lex and Tess Mercer-Luthor.

Chloe: So their back in action and they are going to make this program a living hell.

Richard: What do you mean they are going to make this program a living hell?

Chloe: I think it time you close the door and now the real reason I left my life behind in the past.

(Clark went and closed the door and then he went to sit down next to his wife for support. Jack also wanted to hear this so Chloe started the story.)

Chloe: As you know I came to work for this program five years ago. Before that I worked with a group of superheroes called the Justice League. I was their go to girl under the code name Watchtower working technical support. Even before I became Watchtower I was an aspiring investigative reporter working as an editor for the school newspaper and even worked as an intern for the Daily Planet in college. Anyway all that was happening because my best friend Clark Kent who is now my husband had some secrets himself. It is true when Elizabeth said he is Superman but it took him a long time to get to be this hero. When our friendship fell apart I could not leave the hero world behind so that why I believe so much in this program.

Clark: Anyway in high school I saved Lex Luthor's life we started out as friends but I did not know he had a hidden agenda. He was investigating me and doing his own experiments. It got so bad he was seeking out meteor freaks. After a time we became enemies and I thought he was dead that when Tess Mercer showed up with her hidden agenda. She ended up opening an orb that contained clones of my race from the city of Kandor. Things turned into utter chaos we had to save the city. When all was said on done Chloe left and I left to complete my training then two years later I came back as Superman. A year after Superman appeared it was discovered that Lex was alive and Tess had joined forces with him. Now that he is President he will stop at nothing to protect Earth from alien invasion not caring who he has to kill.

Jack: Well kiddo's you two need to head back and see what you can do to save Elizabeth and John.

Richard: You have too we cannot have information leaked about the whereabouts of Atlantis on Earth.

Chloe: I guess because we know how unpredictable they are. One think Tess knows I am Watchtower because of the incident with Zod.

Clark: I had my suspicions but do you want to take some people from here to help out?

Chloe: Richard do you mind?

Richard: No I don't. Who were you planning on?

Chloe: Well there is Jennifer, Amelia, Laura, Katie, Telya and their husbands and boyfriends I was thinking of.

Clark: Why them?

Chloe: Because they are the only ones that know about my past and besides we don't know the extent of my power coming back yet if I have a weakness like you.

Richard: You sure you want to take our two best medical doctors?

Chloe: Yes because I know their track records and they can handle what is dished out.

Richard: You have a go?

(Chloe and Clark got up left to tell who was coming with them for the save. Besides Chloe had to face Tess who thought she was dead with the Checkmate ambush.)

Two hours later they all headed through the gate. Then they were on a plane to Washington DC meeting agent Barrett to work on this plan. Once the plan was in full force everyone got to work. They located John and Elizabeth being held in the basement of the White House which was lined with leaded so Chloe had to do some hacking to find them. Two hours later they went into action to save Elizabeth and John form their enemies.

Here is the latest update of this crossover. I recently bought the entire series of Stargate Atlantis so I watching my favorite episodes. Yes I figured that Oliver should have a connection to a couple of characters too. Read and Review.