'What they'd done to him, he, McKay and Teyla, was tantamount to torture and betrayal. Then along came Kavanagh.' Will John Sheppard survive long enough to forgive? And remember? Shep whump/team angst. XD

Dr. John Sheppard never thought of himself as special. After being kidnapped by The Trust, he returns to the city of his mother. Atlantis has been waiting for her Chosen to return for ten thousand years. An alternate history.

Rodney McKay was an ambitious man, but his ambitions were of the intellectual variety. He could care less about money as long as there were plenty of people around telling him he was the smartest guy in the room. He had that title neatly wrapped up (whenever Sam wasn't on base) until a certain John Sheppard sauntered into the Antarctic Base.

Sheppard's in a cold dark place, literally. Rodney must guide John through a monster-infested tunnel before either broken ribs, killer cockroaches, or radiation kills him. Written for Sheppard H/C Winter Fic Exchange 2014 over on LiveJournal.

One Shot: Alex's thoughts while Michael is punishing him in Episode One. Please Review!

John returns to Atlantis after a harrowing mission and someone is watching.

This is a tag to pilgrim soul's story, "No Distance Left To Run." Sheppard is not dead, but has been captured by the enemy. Trapped on a world in which he cannot escape and knowing his team believes he is dead, Sheppard is on the run with no team, no backup, and no chance of rescue. Shep whump. Please read "No Distance Left To Run" by pilgrim soul first!

Sheplantis later LorneLantis, gen, warning for violence. Sheppard awakes the ancient's worst criminal. Lotsa whump for him. Escapes are continuously failed and Lorne has to prevent the city from falling into enemy hands. COMPLETE

When John is convicted of killing an innocent he has more to face than hard time. Serious Shep whump, and major angst for the team as John is sent to the worst prison in the Pegasus galaxy. Set in season 5. Keller is there, but Carson is the main doc.

When Steve and Danny find a man lying on the beach, they have no idea its John Sheppard or the impact he and his team will have on their lives. A H50/SGA story that starts a wild ride for Steve & John. Danny whump, but Steve and John get the brunt of it.

Captain Sean Hanson shouldn't have been nervous. After all, Sheppard accompanying his team off world was supposed to be a routine mission… supposed to be. Written for the LJ Sheppard HC Fic Exchange.

A test of courage to free a child sets John on an unwilling journey, where he has to find his past not only to escape oppression, but also to survive. Shep whump and team angst, with my favourite doc Carson

Sheppard's POV - the team accidentally trespasses on sacred ground and Sheppard must face the punishment to save his team. Shep whump, of course.

A chance meeting in a cool bar on a hot LA afternoon.

After John & Ronon are found after going missing, the team's elation is shattered when it's clear something has gone badly wrong. Question is, can things ever be the same again? Shep whump, Ronon whump/angst and team angst with Carson set in Season 2

Sheppard takes a restless Colonel Caldwell on an easy diplomatic mission off-world. However, the easy mission becomes a matter of life and death as the two colonels are kidnapped and Sheppard is gravely injured.

John is captured by a woman who wants him as her consort but when Shep refuses he's made her slave. Question is can rescue come before their friend is broken beyond repair? Serious Shep whump and team angst Set in Season 3 with Elizabeth and Carson.

John is forced to fight for his life and the lives of his teammates. His opponent may be the most formidable he has ever faced... oh, and there’s also deadly radiation, freezing temps and hypoxia.

Rodney McKay can never forgive himself for the 'death' of a friend.

Sheppard and McKay must journey home after an incident leaves them stranded on a hostile world. Sheppard has amnesia, and as if that wasn't bad enough, has been branded a wanted criminal. Sheppard and McKay friendship and whump.

An expedition to a creepy planet brings the team face to face with their own mortality.

After being kidnapped and sold into slavery, the team tries to stay out of trouble until they escape or are rescued. Shep whump, of course.

When Sheppard takes on the plight of the downtrodden men of Medulsa, he gets more trouble than he bargained for. Shep whump prevails! Set late Season 1 so spoilers for any episodes up to and including 'Sanctuary'. Complete - updates every couple of days.

When the Air Force's Top Secret nuisance off the coast of San Francisco draws the attention of the DHS, Nancy is sent to smooth things out. The last thing she expects is a certain John Sheppard to show up at the meeting - or the Juarez Drug Cartel.

Siren is back and has a new game to play with her favorite mortal - John Sheppard. When John falls into a mysterious coma, it is up to Teyla and Ronon to figure out a solution before he is tortured to death in his dreams. Now Complete.

How far would you go, Colonel Sheppard?" asked the tall man. "How far will you go to save him?"

While on a mission to the city of the Genii, Rodney McKay, master alchemist, is given a gift of a slave. Gen AU story with loads of Shep whump.

On a world where Atlantis is a myth and the Wraith are childhood tales, Sheppard and team are captured for information. Surviving is only the beginning. Warning: contains scenes of torture Sheppard .

John Sheppard is exhausted, but when he receives a mysterious email in the middle of the night, he finds himself heading back to Earth to help David Sheppard. That is, if he can even find his brother. And if The Trust doesn't kill him first. Complete

Sheppard and McKay are in prison, where their attempts to survive are observed by a long-term prisoner whose heart has long been frozen against hope. Written for the Comfort flashfic challenge on LJ.

John and his brother are kidnapped by the Trust and have to escape.

Imago: a creature in its final stage of development. John receives a gift that might be used to destroy the Wraith. It might also kill him. Can his team convince him that the cost is too high? Team plus Carson and Elizabeth “Tao of Rodney” AU

Rodney McKay hadn't realised he was being abducted by pirates at first. Now he finds himself on the ship of the second most notorious pirate in the Caribbees... Illustrated historical AU with pictures off-site. More notes within.

Rodney and Ronon are captured by another galactic mad man. Sheppard and Teyla try not to self-destruct while attempting to find them. A little dark.

Rodney has a hard time remembering to call John 'Colonel,' so John decides a lesson is in order. But it's definitely something more. Slash, McShep, No kiddies, medium BDSM

Sheppard and McKay play a most dangerous game with an old enemy. Winner of the 2006 Fan Q Award for Best Atlantis Story.

Sheppard needs to write a handbook about being held captive. AU version to “Travelers” where John wasn't returned at the end. HC

COMPLETE Rodney returns to Atlantis after a long trip only to find more trouble back home. Guess who? Set before Sunday because this is fanfic and I can do that. Shep Whump in an interesting way...

Wounded, alone, and pursued by ruthless bandits, John must depend on his team to figure out the clues he's left for them.

The writers never really explained why Ronon became so attached to his new teammates, or even why he stayed. This is my attempt. Rating is for a little language, but nothing nasty. Gen Fic.

Sheppard is captured offworld and hunted in retribution for prior acts. Spoilers through Sunday. Rating is for violence.

Captured offworld, John and Rodney are sold into slavery. A Shep centred story with a whump or two. Now complete!

Sometimes all that matters are the codes and values you uphold. A deadly vendetta will test loyalties, limits and friendships, with more at stake than anyone realizes. Contains Shep Whump. John,Ronon, Rodney Friendship

Is Sheppard doomed to die, over and over again for all time? Or can he solve the puzzle of the cursed planet before another bullet takes him...

The team finds themselves on the hands of dangerous arm dealers. Whumping, team fic, angst, rated T for torture. Spoilers for up to season three Common Ground.

Elizabeth was looking forward to watching Col. Sheppard win over a new batch of Pegasus Galaxy recruits... When the Wraith disrupt a routine training mission, Sheppard must show the new guys what it takes to get everyone home. Shep whump ensues. COMPLETE

Sheppard is captured by an unknown threat. Will his team find him in time? Warning: dark fic and Sheppard whumping! Rated T for now.

The team's in trouble after a betrayal. Sheppard and McKay have been wounded and the team is about to be burnt at the stake by the Genii. Shep whump. COMPLETED.

John has a bad feeling and pays the price when he ignores it. Friendship fic. Shep.whumping.

A trade agreement goes wrong. Sheppard is separated from his team, forced to live a life foreign and dangerous, while the rest of the team and Carson Beckett must cope with the events.

Rodney must keep John alive until help arrives, and learns about his own strengths in the process. Pure plot device for Shep Whump!

Rodney’s in a spot of trouble and John bails him out. Shep whumping. Complete