Clary is overly protected by Jonathan and his friends, which includes Jace. Not dating is at the top of the list of rules. But she is willing to sneak around to have a chance with what she has always wanted..Love. When she thinks she finally has everything she ever wanted, her life is overwhelmed with dark secrets and betrayal. OOC, AH, and AU. POTENTIALLY BEING EDITED AND FINISHED

"You gonna join in the fun brother?" Jonathan asked looking at Jace for a second before going back to kissing on Clary's stomach. Jace slowly pulled his own shirt off and looked down with sad eyes. "Sorry." He mouthed to Clary before he started kissing her neck. - Jonathan makes Jace do the unthinkable while he's under his control. Warning: Non-Con very M!

Clary found Jace making a mistake he'd know to regret. She leaves, wanting a new life, and goes to an institute in Florida to leave the pain she felt behind. Clary changes; she has a new life and a new style, even a new boyfriend. Clary is wrapped up in her new life, enjoying it and herself to the fullest..that is, until some old friends come to visit.

What if Jonathan and Clary were both brought up by Jocelyn? What if they didnt know they were shadowhunters? How will Clary fare with an over-protective brother once she meets golden boy? Will Clary fall for his charms or will she stay with her boyfriend that is also her brothers best friend?

Takes place before the events of CoB. In the war between Valentine and the Clave, Valentine wins. Complete Summary inside.

Everyone Clary loves is gone and she's on her own. Except for her brother, who she realizes only wants the best for his little sister and comes to take her away. After going with him she battles her own inner demons while Jonathan pushes her towards war. Jonathan is the only thing Clary has left but can she live with her own choices?

2 months after CoLS Clary finds herself taken by her brother and someone she thought long dead. Jace has no clue she's been taken and she is pushed to the breaking point with Sebastian, his new rune and his intentions. Along with the intentions of the dead aquaintence, she struggles to survive and retain her sanity as she is used for the purposes of evil to bring down the Clave.

This is my first FanFic XD Set after City of Lost Souls A Jonathan, Clary and Jace FanFic

The Herondale and Morgenstern firms are in danger of being overcome by a major competitor, the Verlac firm. Both firms are forced to merge in order to keep functioning. However, in order to merge, the offspring will have to marry. Will the stars of both firms agree to get married and save their firms? Or will they fight the agreement? Just give it a chance.

Jonathan has been so patient. He has kept Clary away from his father for a year, in a cell. He has protected her from demons. He has loved her. Now, it is time for him to act as his plans unfold. Mention of CharDeath,Incest, future Lemons. Please R&R.

They're the popular kids in school, the Morgenstern-Wayland quartet: Jonathan Morgenstern, his twin Sebastian, their little sister Clary, and Sebastian's best friend Jace Wayland. There can't possibly be a better group to grow up with - at least until time goes by, putting them in danger of growing apart. (High school AU)

This is from the City of Lost Souls book. This is what happens in my depraved alternate fic. This is my first fanfic ever so please go easy on me... Other categories: Forced, non-con, incest, violence (For those of you who are against, be warned)

This story is set in TMI:CoHF, Jace and Clary haven't been able to touch for weeks now, not even hold hands and all this talk of Sebastian has brought up some pushed down memories in Clary, Sebastian and clary had almost gone there, and clary was willing (in CoLS), and now she was a part of the team that was in charge of his death. What will she do? *Warning-Incest!*

He had taken everything from her–everyone that meant something to her. But Valentine Morgenstern always liked to consider himself as a one of those fair made-mans. So he let her live. And now, several years later, she's out for revenge. Starting with his son, Jonathan Christopher Morgenstern. But, she didn't expect the casanova to be oh-so charming. OOC; *Warning language*

What if Jonathan succeeded in forcing Clary to drink the demon blood from the Mortal Cup? Jonathan, Jace, and Clary manage to escape the Seventh Sacred Tomb. Four years later, Clary realizes that her heart is battling between the boy she'd once loved, Jace Wayland, and the boy she's falling for right now, her own brother.

Sebastian is back to take Clary from her friends and family, offering to leave them alone if she come peacefully. Clary despises him, but will time and a change in his behavior cause her to soften up to him, or will she still choose her friends over the demon that is her brother? After COLS. COMPLETE AFTER A YEAR AND A MONTH.

Clary is happy. She's married to Jace and they have two children. But what happens when Clary's brother returns for her? Disclaimer: I don't own the mortal instruments or any of it's content.

This story follows Clary and how she grew up and trained with her brother if she had been brought up by Valentine instead.

When Clary finds out that Sebastian is going to be living in her house and training with her she is mad,she doesn't like him but she thinks he's kinda of HOT,what will happen? Read to find out!

Clary gets kidnapped by Jonathan after he injures Jace. She goes with him so he won't kill Jace and he takes her to Valentine's old hideout so he can keep her to himself. He claims her as his mate to make sure Jace can never get her back and when Jace finds her, he's in for the surprise of his life.

**SPOILERS for City of Lost Souls! Be Warned** What if Clary had managed to stab Sebastian instead of Jace? What if there was just enough heaven in him that he lived? How can he reconcile his new life with his old? Rating might change, but there might be some "almosts" with Clace!

Jace is an arrogant, spotlight-hogging lead guitarist and Jonathan Morgenstern's best friend. The trouble is, Jon's sister - Clary - can't stand him, and the feeling's mutual. But when the boys enter the Battle of the Bands contest and all but move in with the Morgensterns, the two of them are forced to see a lot more of each other than they would like. NOW COMPLETE (AH)

"Will these tears ever stop?" She thought to herself as she picked up her loofa and started scrubbing herself raw once again. "You will always be mine." The dark voice invaded her mind as she started scrubbing harder. -What would life be like if Jonathan had raped Clary the night he brought her to the seventh sacred site. Warning: VERY M, Non-con, torture, suicide attempt.

During his murder of Sebastian Verlac, Jonathan had recalled Valentine saying that once the Clave had been dismantled his mother, the other Jonathan, and Clarissa would be coming to live with them. When Valentine does defeat the Clave how will Clary, Jace, Jocelyn, the Lightwoods, and their Downworlder friends fare? Now that they're damned, what is their fate?

"To love is to destroy, and to be loved is to be destroyed." AU City of Lost Souls. Some very dark themes in later chapters.

Larger summary inside. My version of what I think will happen at the end of City of heavenly fire!

The war against Jonathan is well underway and in the middle of it all, Clary, Jace, Isabelle, and Alec retrieve the Cup, but at a price: Clary and Jace are trapped in Idris. Prisoners in a court full of demons, Clary and Jace soon discover their only hope of survival may rest in Jonathan's dark past, but finding the boy he once was might be more dangerous than they thought.

What starts off as a normal Shadowhunter training day for Clary and Jace, soon changes when Jace, Alec and Isabelle are called to investigate a demonic disturbance out north of Central Park. What does Jace find that could affect Clary and change their lives and relationship again? Set after CoLS. Jace does not have the'Heavenly Fire' & some mature content about Clary and Sebastian.

He contemplates telling the truth but figures he couldn't risk being separated from Clary and spins a tale on his tongue of wanting to take 'big boy' medicine and that he's sorry and he hugs Jocelyn close and inhales her fear and the scent of Lucian and it's all for Clarissa—always for her. [clary/jonathan] Jonathan and Clary are raised by Jocelyn.

Jonathan returns for Clary and takes her away, insisting that they belong together. Will anyone save Clary, or will she truly be Jonathan's? (My first fanfic, let me know how I do!) Warning *Incest* *Lemons*

Jonathan has never loved anyone. All he's ever had was Valentine and all he wants now is Clary, He needs her. Clary is all he has left and he'll do anything to get her back. Post CoLS

The angel's blade killed Jace instead of severing his bond from Sebastian, and Clary finds herself back with her brother again, while Sebastian may not be quite what she has always thought him to be. And now she is seriously considering the plan of world domination by the side of Sebastian - or rather, doing anything to be by his side. May be incestuous.

New friend or new love? Maybe a vampire new love? who shall clary chose jace or raphael? The one whos part of her life or the one she dreams about? What if she doesn't chose will they share? Maybe she should just do the sex test easy enough. Clary/Raphael jace jonathan Isabelle/jace they not really related. isabelle/simon

And as she lay back her heart filled with an unwanted guilt. Because in her darkest thoughts, she knew she enjoyed it. Despite how much she wanted to protest.

"You're right. What difference does it make, when we weren't normal to begin with?" Will they/wont they? Set in a world where Clary and Jonathan grew up together, closer than siblings should and they're telepathic...Clary/Jonathan. Rated M for sexual content and violence in one chapter.

Clary Fray is in abusive relationship with her fiancee Sebastian. When she becomes Jace Wayland's new assistant, the road gets rougher. Will she be able to keep her secret from Jace?

One betrayer. Many tradgedies. Continuous story. Izzy, Clary, Simon, Alec, Magnus & Jace POV (not every one in each chapter) M because of language and dark scenes- NO self harm but includes drugs and rape. Read&Review3

the one time he kissed another. it mattered, of course, because she was his sister. / haiku.

Spin-off from Nervous Glitter Tornado; part of the Secrets series: For special circumstances Mira Tyler has been living with the Morgensterns for the past year, now everything is starting to blow up in her face. Jonathan's family has more issues than she thought, and why does that Clary Fray girl hate her so much? Follow Mira as she faces hell and the devil's demons. OC, AU

From the moment that putrid substance crossed her lips she had felt it creep over her like the sweet caress of a burning whip. The power it granted her like a sigh of breath that awoke her senses and filed her with strength and a new purpose.

My take on City of Heavenly Fire. New demons are making appearances and Sebastian is striving to get Clary back. He is back and more venomous than ever. Throw in some romance, drama, and humor and you've got an exciting story to read. I'm new at this, so please read and tell me if I should continue! Thanks and enjoy(:

'He was nine when he met her. He sat alone at the bottom of a flight of steps that lead up to a set of flats, his ivory coloured hair messy, falling into his eyes and an angry scowl on his face.' Clary/Seb. Out of character Sebastian. Enjoy!

Clary is the daughter of Valentine, King of Alicante, and she views her life as princess as something of an aging joke. She has only one friend, no mother, and a dark secret. It isn't until Jace, a slave, comes along, that Clary's life begins to unravel.

Jonathan/Sebastian is not dead and he returns for Clary. There are several fics with this theme, but please give mine a chance! WARNING! This is a VERY dark fic with rape and incest. Please do not read if this will bother you. M for a reason! Complete

For Clary's whole existence, she, and her mother had always been under Valentine and Jonathan Morgenstern. One day, they finally escaped them and sought help from the New York Institute. Clary meets Jace, and a story develops. But Valentine and Jonathan Morgenstern wasn't intending to let that continue... Longer summary inside.

"You only know the way Valentine is now. You can't imagine what he was like back then. When we were at school together." -Circle era-

Sebastian gets a hold of Jace and Clary again but this time he's not trying to play the nice guy. Clary finds out just how twisted her brother is and how bad he wants her. 100 word drabbles. After CoLS. Pairing: SebxClary.

Clary and Sebastian are the best of friends. But he likes her. What happens when a new guy comes along with an interest for Clary? The combination causes WW3 in a high school setting. Who will win the heart of the beloved redhead? This. Means. War! *Rated T due to mild language. Sorry no lemons*

Mortal Instruments. Clary/Jace, Clary/Jonathan. Jace and I. We're a perfect couple. I love him and he loves me. Isn't that it? If he loves me, why does he seem so distant and inattentive? What's going on with him?

Idris has fallen. Valentine has risen to power and spared Clary's life for her gift. Unfortunately that makes her of interest to his son, and her true brother, who has taken it upon himself to twist her into something they can use. Warning: Incest

One Shot. Uhmm. Clary and Jace went through a horrible breakup, and who's there to comfort her? The one and only, Sebastian. Rated M for Lemons and Incest.

Clary is finally done with her long time boyfriend Sebastian. She plans on starting college off with a bang and letting loose. When she meets Jace she can't resist him but is temptation too much for her? Will they fall in love or will she fall apart. Jace x Clary REVISED WITH BETA -thanks Livybug-

Clary must attend an Upper-Class boarding school with her brother Johnathan when her mother marries to a man named Luke. While attending she meets an arrogant student named Jace, his adopted siblings, and friends. Normal Pairings. All Human. JxC

When Valentine snatches Clarissa from Jocelyn and brings her with him back to Idris, he notices a change in his dark son, Jonathan Christopher. Jonathan and Clary creates a strong bond together and Valentine can't tell if this is good or not for his plan.

The Institute, where rich parents dump their troubled kids for the year. Here, its pointless to pretend that your not sadistic or a sex addict, because the chances are, the person next to you has worse problems. OOC, strong lemonade, difficult topics

Jonathan refused to go quietly into that dark night. He made it through alive, swearing vengeance as he retreated to the only sanctuary he had left. Little did he know, demon blood would only protect him so far. M for language and sexual themes. Completed

When Clary and Jace have another fight, Jace hits the gym. But where does Clary end up going? And maybe Jace doesn't want to know. TWO-SHOT AU R&R

Clary and Jonathan have a past she would rather forget but when unavoidable circumstances arise they are forced together to work out their differences. Which might have been easy if it weren't for the presence of Jace lingering around them. Please R&R

Jonathan feels he can really talk to those he kills. And why not? It's not as if the dead can reveal his secrets to anyone. A one shot in the mind of Jonathan Morganstern about his father,Jace and the sister he has never met as he kills the REAL Sebastian