Hodgins' brother Jeffrey has been murdered to get to him. Booth and Bones assist he and Angela to discover those responsible, but their world could be rocked as they discover many painful truths in their quest to bring the guilty to justice.

What would have happened to Peraltiago and our intrepid detectives if Amy had reported her mentor captain's ugly behaviors?

What if the merger happened as it was originally planned? What if the Scranton Branch was closed and a few employees were brought from Scranton were brought to Samford? What if Pam went to Samford? This story answers these questions and more.

Nearly a year has passed since the events in the Honeymoon is Over, JJ is eleven months old, Jake is a sergeant, Amy is a lieutenant, and the peace and quiet of the past year are about to be shattered as they find themselves in the middle of a case that could cost them dearly.

Jake and Amy return from their honeymoon and Jake is anxious about becoming his father when a real problem occurs that could change their relationship.

Jim Halpert's thoughts and struggles as he deals with Pam's rejection on Casino night through his relationship to Karen and up to his relationship and engagement with Pam. Includes Jim's struggles with depression and reconciling what he truly wants as he develops feelings for Karen as they date.

Jake and Amy move to a new house in Brooklyn and meet their new neighbors, the Halperts, who have just moved themselves.

Starts right after Jake and Amy get married.

Takes place during the episode New Captain and through The Funeral, showing the off screen issues and musings of Jake and Amy and how they dealt with hooking up only to lose each other.