This is a collection of TMNT one-shots, including stories based on Broken Foot, Power Inside Her, Deadly Venom, Requiem, Heart of Evil, Owari, Monkey Brains, Creeping Doom, Scroll of the Demodragon, Apocalypse Arc, Buried Secrets, Metalhead Rewired, Lone Rat & Cubs, Monsters Among Us, and Within the Woods **TMNT Universal Reader's Choice Awards 2016, 2017 and 2018 nominee/winner**

It had been the perfect day, none of them expected it to go the way it did. Separated, sold, tortured and experimented upon, will the turtles ever find each other again, or will their souls fall apart along with their family? Warnings for each chapter at the beginning of the chapter. Rated T for violence. Based in the 2012 universe.

Leonardo and Raphael decide to take matters into their own hands, together they set out to finish the war with the Foot clan, once and for all

Life was already stressful enough for Raphael, who couldn't tell if he really belonged, or was wanted. He didn't need his little brothers to get hurt, or to suddenly be in a fight with his dad, or for Shredder to launch an assault that he partially blamed himself for. He didn't need to be suddenly coming apart and all alone, feeling like he'd touched the world and it had shattered.

Based on the episode, "The Power Inside Her". April was not able to bring Donatello back which changed everything for the family of mutants. Leonardo becomes withdrawn and starts having nightmares while Michelangelo looses himself in television leaving Raphael to try to keep the family together. The usual hothead has trouble with the new role and is worried that his little brother

With Leonardo critically injured and Raphael presumed dead, the brothers must find a way to live without the things they need the most. And once they get the things they need back, will they ever be the same? Rated T for torture and blood - lots of not fun stuff :D

"The Hamatos never expected to see their father again, but that all changed when they met Oroku Saki and his son Raphael. Nothing is as it seems, and all their lives are changed in one summer." Human AU. Raph-Centric (of course) WARNING! Rated T for child abuse and mentions of other kinds of abuse! Will have specific warnings every chapter! This is very angsty! Hope you enjoy!

Raph's always said he can't stand his brothers. But, when a new threat comes, taking his brothers away, what is Raph willing to do to make sure nothing will take his brothers away from him? Will he be able to save them? Will they fall? Will he finally realize how much his brothers truly mean to him? Or, will he let them fall? Note in future chapters this gets really dark! Seriously

After an argument, Raphael runs. But when he doesn't come back his brothers know something's wrong. An amateur team has to find their missing brother, then deal with the horrific results that come from weeks of mental torture. Vows are spoken, secrets revealed, and apologies made. But will it be enough to fix what was broken? Rated for violence! Raph-Centric! Raphril later on. :)

[AU Non-Mass/Time Travel *complete*] They won the war: Kaguya was sealed, and everyone thought it was over...They were wrong. For Asura and Indra, it should never have come this far, and the brothers were going to make sure it never would...and using all their power, they were going to forge a new path..one that would change the lives of Sakura Haruno and Itachi Uchiha forever.

Four foster kids, A year ago they'd never met, and now they are brothers. Twists turns, plot twists and disaster follow the four boys as they go through twelve months of constant change before everything is finally stable. But despite all this, they forge a connection that can only exist between brothers. this is a human AU obviously, it's very long. no specific version. COMPLETED!

Just what the title says. A collection of one-shots based off different letters of the alphabet. All leading to one very hurt Jay Halstead.

Raphael had gotten used to his anger at Leonardo. It burned but it was familiar. The anger he felt growing towards Splinter wasn't familiar and it burnt hot and bright inside of Raphael, threatening to erase away the connection between them as it morphed into resentment. What did it matter to Raphael though? Splinter favoured his brothers anyway...

One night Raph goes out for a run in the city but something strange happens to him. Will Raphael's life ever be the same again?

After disappearing at a young age, Raphael is reunited with his family after eleven years of being separated. After such a large time gap and a cruel upbringing, is the Raphael they knew still under this hardened shell of a teenager? Rated T for some swears and slightly disturbing themes.

Raphael doesn't tell people how he feels, not really. But when the time comes for him to do so, he finds that it might actually help, and his brothers learn some things they didn't know before about their hot-headed sibling. Just a little fluff shot! Rated for violence and suicidal thoughts. please R&R!

The turtles have always been a fearsome fighting team. But then came the day they were all separated. It's up to Raph to set things right and bring his brothers together once again. (2k12 verse)

Leonardo had been missing for two years now...held captive by the shredder...everyone has Givin up hope of finding him...everyone except Raphael...

AU. When Raphael got captured, he expected pain. He expected hours of interrogation and torture. He was prepared for it. He wasn't prepared to find mercy at the hands of two young mutants who've been living in darkness for far too long. No OCs. Cover art by Fanbeing. Third Place for Most Intriguing AU, Most In-character Donatello and Second Place for Most In-character Raphael.

Being the only one alive, he goes to the past, and tries to change his future for the better. but, which of the turtles is he? As he tries to save his brothers while trying to keep his identity a secret, Leonardo, Raphael, Donatello and Michaelangelo try to figure out who this mysterious turtle is by putting the pieces together. And can he keep his identity a secret from Splinter?

After the death of Raphael, the Hamato clan and their human allies hatch a twisted plan to get back at the Shredder and his henchmen who helped torture their lost fiery warrior to death.

Raphael discovers that primal instinct has a dark side.

Raphael Hamato is the strongest in his family, they all know it, and they all accept it, but after he get's severely injured in a fight with two of shredders cronies, they know he may never be the same. what they don't know is how severely, and they are not at all prepared for it. rated for description of injuries. feel free to review

Raphael is captured by the combined forces of the Krang and Shredder. He is constantly surrounded by his worst enemies who torture him and nearly kill him. With his only escape being the portal room, he ends up teleported to a strange region on earth, slowly dying. This Fic is gonna be around 85 chapters! Please review, and favorite! Published Recently

This is another story to One's True Instincts that takes place just before Donatello takes Raphael and during the time Raphael was Donatello's prisoner in Bishop's base. What was going on behind the scenes? All we know what was happening to Raph, was there more going on then we all relies? Disclaimer: TMNT isn't mine and this is just a fan fiction writing. No money made.

Alpha/Beta/Omega AU: Omegas are going missing in Chicago, and CPD are on the case. Secrets and dynamics are keeping Halstead and Lindsay apart, but does it have to be this way? Set during season 3. This fic is an M version of a NC-17 story hosted at AO3, under the same author name and title. Contains mentions of abuse, dominance/submission and sexual situations.

A young turtles story that focuses mainly on Raphael and how his family cope with his unknown illness.

When Kakashi is injured, his team returns to complete their mission without him. After over a week of silence, Kakashi is dispatched to check on them. Will be be able to reach them in time or is he already too late? **Warning: May contain major character deaths**

Raphael would do anything to protect his brothers. But when one brother goes down, all his strength and rage can't fix what's broken. Raphael will promise the impossible if Donnie will just come back to them. But will the universe accept his offerings?

A brutal battle in a warehouse stir tension amongst the brothers. 2 weeks later that tension erupts in an epic fight between Raph and Leo; resulting in the red-clad turtle storming off. Suffering from unrelenting insomnia and deepening depression, he is ambushed and easily defeated. Now the only question left for his brothers: is he alive? Dripping angst and bloody good violence.

Au Leonardo and Raphael were found and raised by the Shredder, Mikey and Donnie were raised by Splinter alone. This is from an old Rp I did awhile ago, with someone who dosen't want their name mentioned, So I've cleaned it up to post.

With the passage of groundbreaking legislation, mutants are now free to walk openly on the surface and enjoy the same rights as any citizen. But the world takes time to change, and hate and injustice constantly rears up on both sides as the war for equality rages on. **2nd Place Best Crossover/AU and 3rd Place Best Raphael in the 2015 Stealthy Stories TMNT Fanfiction Competition

Finding themselves overwhelmed by the foot, Michelangelo and Raphael are left to find their brothers on their own. Can they figure out how to work together or will the absence of the strategist and the genius of the team hurt their chances?

An accident leaves Raphael battered and without his memory will his brothers be able to bring back the person that he once was? Rated for some swearing.

Unlike every other normal day for Raph, something about this one starts making him feel awkward towards Donnie who seems to be acting out of character. The more the day continues, the more Raph becomes agitated, violent even to the point he questions his own sanity. Is his brother really himself or was Donnie replaced by a look alike? Or has he actually gone mad with delusions?

When the one pulling the strings behind The Warlock returns to Oz once more, he creates a deadly poison for Mikey that will slowly kill him. So now, its up to Leonardo, Raphael and Donatello to journey to Oz to defeat The Dark Mystic and cure Mikey before time runs out. But will they be strong enough to pull it off? (I OWN NOTHING! SECOND EDITION TO MIKEY AND THE WIZARD OF OZ)

One night on the rooftops, Raphael is presented with a deal that's consequences won't turn out well either way. However, Raph is conflicted to make the deal. But when his family finds out about it, he may loose everything he holds dear. Author's Note: This is the first TMNT Non-One shot I am doing! Super excited for this! I hope you enjoy the story! -Cartoon Fanatic

It's no one's fault that they got captured but now they are at the mercy of the Shredder and his mutant companions. Each go through their own hell that tests their bonds as brothers but they are determined to survive and 'leave no turtle left behind'. (Warning: extensive injury, torture, and lots brotherly fluff!) 1st place for Best Villain (Shredder) in 2015 Fanfic competition!

Raph and Leo where of best of friends when they were kids. But unfortunately such times could never stay as is, while they find out they have to follow the paths they were given, losing each other on the way. Will they ever regain that once lost friendship? Disclaimer: TMNT isn't mine and this is just a fan fiction writing. No money is being made on this story.

After being captured and experimented by the Kraang, Raphael becomes an evil super mutant who can't seem to be tamed. Now, It's up to his little brother, Michelangelo, to calm this beast and bring back the real Raph. Will Mikey be able to befriend his mutated brother, or will he just become one of the Kraang's pets. Bad Grammer Warning.

After being separated from their group during an ambush attack, April and Raphael struggle to survive in this new merciless environment. Can they make it out alive with all the odds stacked against them or are they doomed to die in this prison with no one by each other to lean on?

The night was silent and so very still, and Raphael thought that it was a good night to die.

A 2k3 "Same as it Never Was" what-if story. Michelangelo, Leonardo, and Raphael died in the assault on the Shredder's stronghold. But what if they hadn't?

FreyReh's A-Z Challenge, TMNT style! CHAPTER 7: Grow. Raphael and Splinter have a heart to heart about some insecurities. WARNING: Chapter rated T for mild language.

I grinned to myself. Maybe Raphael going missing would be a turning point for all of us...

This story is based off the dream I had of Dark! Raph. The turtles face Shredder and as Raphael is about to end him, Shredder injects the syrum in Raph and has him taken away. Shredder fills Raph's head with lies while the turtles heal and train harder than ever to get Raph from Shredder's clutches. With the help for Casey and an escaped Karai, they go back to get their brother.

Donatello and Raphael have been captured by the foot. Leo and Mikey try to come to their aid only to find themselves trapped too. What will happen to the four turtles? Will they survive? R&R x

Putting on his helmet, he revved up his engine, bringing it to life. "Raphael!" "...Bite me," was the last thing I heard from him before he bolted off into the stormy night.

Leo, Mikey, Raph and Donnie are thrust into a bad situation. When they wake in a foreign land, they are captured, chained and soon separated. While Michelangelo lies ill, Leonardo gets examined, Raphael gets beaten, and Donatello is left in the hands of the Lady who, in one way or another, is responsible for their woes. As factions clash, the turtles are caught right in the middle!

Sequel to 'Raphael's Torture'. When Donnie is hit with mutagen, his family is unsure about what is happening to him. Will his family be able to help him? Or will he destroy New York city first? Bad summery. Minotaur meets 'Good Genes' with a dash of 'Frozen'. Sounds like a weird combo, but I will make it work! I do not own TMNT, or Frozen.

Raphael heroically rescues a little girl from the hands of the Foots. Or was it otherwise? [EDITED]

Leonardo and Raphael are fighting again. Big Surprise. But will it ever end? Or will they end up saying things they'll never be able to take back? Multiple Chapters (may change the title if I decide to continue)

Leo and Raph get into yet another fight, the shredder is giving Purple dragons the ultimate weapon. Can the turtles figure it out before our famous hot-headed turtle loses his life? (Art by Sneefee) NO ROMANCE

Weeks after the events of Trust, Raphael still struggles to accept everything that happened. And when he finally reaches his tipping point, what can he do to take the pain away? Sequel to Trust, multiple P.O.V.'s.

What if there was a reason Raph was always so mad?

On a spaceship Labyrinth, Raphael fights for survival with an unlikely charge.

Raph is captured by the Shredder, who is trying to get Raph to tell him where Splinter is. Will his brothers save him before he does something he regrets? I do not own TMNT.

(2k12 Universe) Raphael has always been violent. Temperamental. Uncontrollable even. In truth though, he'd do anything to protect his brothers. But how can you protect your brothers from yourself? Shredder's found a new weapon, one that's stronger than any other; Raphael. His plan is the perfect mixture of horror and tragedy. But Raphael isn't willing to play this game. Not today.

It's a well-known fact that Raphael has a short fuse, but lately his temper is out of control. In a fit of rage he accidentally does the unthinkable and the aftermath tests them all. The bonds of brotherhood are broken and nothing will ever be the same. 2012 'verse. (Second Place Winner for Best Raph on Stealthy Stories 2013 Fanfic Competition! Thank you so much guys!)

Something is happening in Raphael's head and taking away his sanity. will his brothers be able to save him before his mind is completely gone?

Raphael is captured by several adversaries- and broken. It's up to the family he's left hanging by a thread to pull themselves together. Then its a struggle to deal with the memories. Fresh and old, genuine and artifice. Only then can they start over. To emerge from the ashes as a family, stronger than ever. Revamped and continued starting August 25, 2013.

Michelangelo has been captured by Bishop and put threw tests... Raphael was taken too but was kept away from his brother and in a different room... Michelangelo's memory has been damaged and he cant remember what happened... Raphael knows something but isn't telling any one... Michelangelo needs to regain all of his memory before its too late.

The turtles go and investigate something weird that's happening at the T.C.R.I building. While inside they find a huge machine that the Krang and Shredder are building. While trying to foil their plans Raphael gets zapped by their huge machine, and passes out. When he awakes, the turtles find that they now have a little problem. A very little problem. FINISHED!

The Shredder has returned from his banishment on the ice asteroid and is seeking revenge. Raphael is captured after sacrificing himself to protect his brothers. Now he is being tortured by the Shredder. Will his brothers be able to find him or will Raph continue to suffer at the Shredder's hands. Takes place in the 2003 universe. Rated M for later chapters.((Being ReWritten,sorta))

Donnie and his brothers decided to go on a fishing trip, just to have things go horribly wrong. Graphic Content, Death, Gore, Disturbing Content, Foul Language, Please Don't Read if you don't like this stuff. (Based more on 2003 version turtles)

Raphael and Leonardo are trapped in the rubble of an abandoned building after getting into a fight at the lair.

Raphael doesn't feel wanted, he runs away and gets captured. What will happen? Discontinued for now.

Laxus has never needed help. He can handle himself. Nightmares, pain, confusion; he can get through those alone. He was a Dragon slayer after all. That was his problem though. He was a dragon slayer. There wasn't much info on them for him to be prepared for what was about to happen. The monster within was ready... was he?

With Bishop after the Turtles, they all separate and Donatello finds himself alone. That is, until he gets a call from Raphael directing him to safety. But there is something strange about the phone call...

When the City of New York is in peril, four unlikely heroes will rise to the surface to protect it. Follow Leonardo, Raphael, Donatello and Michelangelo as they and their human friends, April O'Neil and the masked vigilante Casey Jones fight against the evil Shredder and his vast army of Foot Ninjas. (Based off 1990's movie I OWN NOTHING)

This is a group of drabbles (or one-shots, since they're kind of long) about different adventures and moments the Turtles have shared at different ages. Why is Raphael afraid of bugs? What happens when it storms? A fight with a toaster! So many moments, so little time! Humor, sweet fluff, and adventure galore! Brothers together, Turtles forever! -

When a confrontation with one of his brothers leads to a fight neither of them would have thought could go so far, Raph vanishes. Raphael has made a mistake that could change the war for the worse. Leonardo, Donatello and Michelangelo and April O'Neil take it upon themselves to set things right. To pull their family back together. Before the Shredder tears them apart.

This is a story of how the turtles get to OT4. Warning: turtlecest, adult language, sexual themes, kinks

After the battle with Fishface; Raphael is seemingly cured of the venom. But when he suddenly falls ill without warning; the race against time has begun to save one turtle's life.

Raphael and Leonardo have been captured by Karai. While they await rescue, Karai takes something of Leonardo's that can never be returned. Mix of 2k3 and 2k12. Read the warnings before continuing. Rated M for a reason.

Faced with the uncertainty of Donatello's future, Raphael calls upon the memory of time when he was able to protect his little brother from the monsters that lurked in the darkness. The fear of a young child haunts him, yet remains his only source of comfort against the horrors he must now face. [Turtle Tots][One-Shot]

The Shredder has been defeated. Leonardo is still fighting. Raphael is trying to hold on.

Raphael's worst nightmare has just came true. Has been discontinued for now. I need some time to think what the next chapter will be. Sorry guys!.

A ghost from the past forces Raphael to become the Nightwatcher once again. With the Foot and an unseen enemey on his tail, will Raph and his brothers be able to conquer this threat? Or will the Nightwatcher finally perish? Find Out! Please Read and Review!

The Turtles are now twenty-five and Raphael has only one thing on his mind. Struggling to survive, Raph sees only one way out. Warnings: Suicidal Urges and Intent, Angst

After a fight Raphael loses his memories. He can't remember his friends, he can't remember his family he can barely remember himself. Can they bring him back or is the Raphael they know lost forever.Chapter 4 is up.

This is when Raphael got hit by a huge truck, being rescued by four figures, which are...the 1987 Teenage Mutant Ninja Turtles. This is going to be...abit similar to Turtles Forever movie, but close enough. Enjoy!

A brother's sacrifice and last moments on earth..."No! Raphael get out of here, now!" Leonardo cried desperately, seeing the flashing red numbers from the corner of his eyes. "No," Raphael whispered fiercely. "I'm not going to let you die alone. If we die, we die together." Then Raphael grabbed Leo's hand in his and squeezed. And then the bomb went off. CHARACTER DEATH. Two-shot.

A terrifying event finally forces Raphael to consider the consequences of his actions—but will it be in time to change anything?

Raphael is surprised when Donatello acts on their growing feelings for each other... in terrifying ways. WARNING: turtlecest; swearing; non-con; bloodplay.

"If yer gonna shoot me." I lean forward, eyes narrowed, voice low and husky, "Then do it." I growl, "Now." A last run as the Nightwatcher has devastating consequences. Isolated by a snow storm, will the two brothers make it? And will their bond survive?

When Raphael is captures, his tormentors do everything in their poor to break him. How much can he take, and will his brothers be able to find him in time?

Set in 2k7 movie story line. Leo is gone for 2 years. But when he returns, some events happens that will change the turtle boys. Don and Raph are the ones more at a lost. Rated K Complete fanfic won't be submit . Many genres: Family, friendship, angst.

One-Shot. This was a bad idea. Donatello knew it was a bad idea from the second the words left Raphael's mouth. If he could just make it back to the lair alive he was going to make sure Raph never forgot that.

Two months after "Resolution", the entrance of mysterious new adversaries and a missing woman bring turmoil back to the surface for the entire family. Warning - "simple" is not a word in my vocabulary.

Raphael gets attacked in an alley. A mysterious presence saves his life... and then keeps showing up around the lair. Who *is* that guy?

Six months after "Manhunt", the turtles are targeted by a new nemesis. Will an injury sustained during capture prove to be life altering for the whole family? Raphael, I DO apologize in advance.

Raphael is trapped in a dream state. And is being haunted by, Karai. I do not own ninja turtles. This is mine and my brother's idea.

Sequel to The Halfway Point. An enemy who knows Raphael's secret strikes at his weakest point. Meanwhile, Donatello tries to deal with the unthinkable when Leonardo's vengeance returns to him from a source neither thought possible.

Injured and alone, Raphael's lost in the wilderness of the Upstate woodlands. Will he be able to make his way back home again? And how will he survive the insane family hunting him until he does? COMPLETE

Leonardo and Raphael would do anything for their family. Would one go too far?

When Raphael is captured and traded as an animal on the black market, he is forced to question his pride, his strength, and what it really means to be human.

Raph is infected with an Utrom virus. Out of hope and out of options, the guys have no choice but to ask help from their worst enemy. Only, said worst enemy has plans of his own for the turtle in red.

Raphael has to make a final choice for his family, and for the rest of the world. Warning: slash/turtlcest.... Chapter four has been posted on my livejournal...

Raphael drives Leonardo crazy, and Leo feels like his forced to do something hasty.

COMPLETE! Donatello's skills are put to the test. Can he find the antidote that will save his brother, or will Raphael's death be on his hands? Rated M for language. PLEASE R/R!

HAITUS/ EDIT: On the fourth year anniversary of his father's death, Donatello is forced to go above ground. He sees Raphael again, for the first time in four years. Both brothers rub one another the wrong way and prepare for a fight until all of New York goes black. Drawn to a new laboratory, the brothers find out that their are other people who know where they stand.

What's being shipped into New York City illegally? Who are the victims in this latest crime? Raphael is going to find out, but it might not be what he thinks. Features Amber. Warnings for drug, language and sexual references. COMPLETE.

“I am sorry Raphael…. But I am just not as strong as you are.” Raphael is out walking in the rain and tries to coax a troubled young man down from a ledge. My first LONG oneshot.

When Raphael disappeared his family feared the worst. However their worst never included Bishop and his ungodly expirments. Can Raphael be saved? And by who?

The guys are captured by Bishop again. Mikey is the focal point of an experiment that will change all of their lives, particularly his and Raph's. Very dark fic, turtle torture, see inside for additional warnings. Rating M, overall. Part of LJ fanfic100.

After an ambush, Casey is given until the end of a radio program to perform a theft for the Purple Dragons before Raphael is murdered. Rated for language and violence.

Complete: Karai's orders are to destroy Leo at all costs, but upon hearing her plans, Raphael finds a way to take his place in capture. Torture, pain, and interrogation ensue, but how long can he hold out even for his own family?

Far from friends and without their father's help, four brothers must engage in the most difficult spiritual battle of their lives to save Raphael's mind and soul from being destroyed by an old enemy.

Raphael gets caught in the Shredder's game. Rated M for violence and language. CHAPTER 4 UP!

What happens when Raphael's emotions become something more. A new ability. Is it a gift or a curse? Finished Finally!

Raphael finds himself in a strange and dangerous world.

Can Michelangelo keep Raphael and his brothers safe when his nightmares start to come true?

Prequel to Red Raphael is pushed too far.

Leo was poisoned by the Elite will Raphael make a deal with the devil to save his brother...Two Parts

In the middle of a fight, Raphael is saved by a mysterious woman. Who is she? Why does she have such profound affect on our boys in green, and what does Mikey know that he’s not telling?

The confrontations of Raphael and a dark turtle named Ash. Ultimately, after a chain of events Ash becomes something more powerful and deadly than before. And only Raphael can stop him.

Raphael's little obsession has become a big problem for his family. When it becomes a threat to their existence, where will their loyalties lie? A slightly darker side to Raphael's loneliness.

Chapter 12 is UP!!! The War begins, but the turtles can't take sides...meanwhile April and Raph must rescue...Shredder!? If you've never read this...now is your time to join this epic adventure of in-character angst!!!!!!

Raphael just isn't acting like himself. **rating for swearing** *completed* Please R&R and be kind :)

A string of murders leads the NYPD right onto Raphael's trail