John receives an urgent letter from his half brother and he decides to go visit him. Whether or not that is exactly a good thing, John has yet to determine. Atlantis Psych crossover

A familiar face is found as Atlantis learns the complications of being in the San Francisco Bay. Very light Sheppard/Weir. First chapter takes place in the SGC, after that it's all Atlantis.

The continuation of Sheppard story and why his gene is strongest. He develops his abilities further and struggles to contain them. Shepcentric with shep whump, O'Neill makes a return because I love him too. Some profanity/violence.

*sigh* okay, first summary for my first fan fiction. here it goes: Sheppard thought he had finally seen the end of Kolya, at least he had hoped. shepwhump takes place in a universe that Irresponsible never happens. hope you like it :

Some things have to be accepted; others have to be fought with everything you've got. A tragic off-world mission rocks Atlantis and shatters John. Struggling to pull the pieces together, he discovers he has one chance to set everything right.

Its a fight to survive when the team crashes on an unknown planet. Written originally for the LJ Genficathon.*spoilers for early season 5 if I even need to say that anymore... ; *

Sequel to Cross Jurisdiction. Team NCIS heads to Atlantis and ends up stuck in the middle of a very Atlantean style crisis...Teammate will battle teammate while around them Atlantis itself falls victim to a nasty virus

After Season 5 conclusion... a pilot episode for what would be both a new series and a continuation of Stargate Atlantis. Assuming Enemy at the Gate never happened. Wormhole drive my eye!

Gibbs life hangs in the balance when he goes back to Stillwater and gets more than he bargained for. SPOILER ALERT!Several references to Season 6, Heartland. Final chapters up!

Tim McGee is forced to go into Witness Protection; everyone except for his immediate family & Gibbs believe that he is dead. . . how does it affect the team? McAbby, and all completed:

"Am I the only one worried about you?" Rodney asked. Sheppard's deepening connection to Atlantis offers unexpected solutions when a threat from within risks the safety of everyone in the city. Sequel 2 Feelin' Hot Hot Hot. Sheplantis, Shep whump

SGA/ X-Files cross! The team end up somewhere unexpected after checking out a weird piece of technology on Atlantis, things go steadily downhill after that.

Sheppard and his team have to fight for their lives when the Wraith capture them. But for the hope of freedom, they'll have to survive in world they've never faced before. Will have some Shep whump and is rated T for now...

"Danger comes," the chorus of voices echoed in Sheppard's head, calling him back from the darkness. An incident at an Ancient outpost gives Shep the means to help the city when disaster threatens ... first in a series.

Sheppard and team go on a vacation, but it turns out to be a struggle just to survive. Set in early Season Four so spoilers up through at least the first half. Shepcentric with lots of Shep whump. Some violence and language but mostly like regular T.V

Michael calls into question the paternity of Teyla's child. J/T

Circumstances, and Rodney's friends, won't allow him to keep his past a secret anymore. A veritable McKay Whumpathon! Warning! Spoilers. Lots and lots of Spoilers. Ever so slightly AU. Final chapter posted.

Set after the events of Epiphany and Critical Mass. A continuation of the ‘Inheritance’ series. Colonel Sheppard and Dr. Randall have to deal with a few implications of the ATA gene.

Drowning had never been a fear Rodney needed to embrace. Trust, relying on others, and having to betray his own secrets, however, was something that kept him awake at night. Friendship, whump, genetic manipulation, homicidal tree huggers…

Lorne makes a snap decision and does whatever he can to keep Sheppard alive. Written for the Secret Santa exchange on SheppardHC. Rated T for language and brief nudity.

Sheppard learns it is more about him than he could ever imagine. His gene is strongest for a reason, and he learns why. Shepcentric but team invovled, even O'Neill. Shep whump sprinkled through this adventure. Not a fairy tale! AU if that fits better

This is in response to many requests for a sequel to Beneath the Surface, and it's in chapters. Teyla is destined to be married, but it is not to the one you think...Inspired by the song of similar title in the musical Wicked

John is sent back to Earth to recover from his latest set of injuries and decides to visit his father. He is very surprised at the homecoming he receives.

A garden is discovered on Atlantis and someone in the city is willing to resort to violence to preserve its secrets, secrets which could prove fatal to the entire expedition. Contains Shep whump. COMPLETE.

The writers never really explained why Ronon became so attached to his new teammates, or even why he stayed. This is my attempt. Rating is for a little language, but nothing nasty. Gen Fic.

Not your ordinary, every day, trip through the Stargate... at least not for John Sheppard. COMPLETE! Warning: There be Whump here!

John activates a strange device and finds himself in the past. While there he helps to shape a member of his team into the leader she is destined to become. COMPLETE! Now revised to fit with series four canon.

After accidentally activating an Ancient device John and Teyla find themselves the proud parents of a baby girl. Suddenly they must learn to deal with diapers, 2am feedings and their new family ties. Sheyla, slight SG1 crossover. COMPLETE!

After Sheppard causes an accident in Atlantis, he and Weir find themselves involved in an disagreement. Will the Atlantis team regret the harsh words spoken to Sheppard when he is taken hostage offworld and will they be able to fix the damage to Atlantis in time to save him?

For a brief moment, he thought that this was heaven. Time dilation, Wraith and the crusades, oh my! A gen. team fic with John and Rodney front and center. Oh yeah, there's whump.

Sometimes all that matters are the codes and values you uphold. A deadly vendetta will test loyalties, limits and friendships, with more at stake than anyone realizes. Contains Shep Whump. John,Ronon, Rodney Friendship

When Sheppard activates an Ancient device nothing seems wrong. But when people start getting hurt, the Atlantis team start to investigate. Will they realize what's wrong with Sheppard?

Halloween story, albeit rather late, or, as the case may be, early. Sheppard and McKay are trapped on a world with a malfunctioning Stargate, a monster ... and a mystery. Now complete.

AU, LA Cop John Sheppard is accused of being a serial killer, his partner Teyla desperately tries to clear his name meanwhile FBI Agents Ronon and Elizabeth try to track him down. Sparky Spanky

COMPLETE. Captured and experimented on by the wraith, Sheppard must find a way to save himself before it's too late. Common Ground spoilers.

When a routine mission goes horribly wrong, Major John Sheppard survives, but now must face an enemy none of his training or experience could prepare him for himself. Suddenly, John is forced to question everything he's ever stood for.

John starts to exhibit telekinetic abilities after returning through the time dilation portal. Takes place between Epiphany and Critical Mass, spoilers for Epiphany and Condemned. COMPLETE!

Elizabeth was looking forward to watching Col. Sheppard win over a new batch of Pegasus Galaxy recruits... When the Wraith disrupt a routine training mission, Sheppard must show the new guys what it takes to get everyone home. Shep whump ensues. COMPLETE

Vacations usually don't involve attacks by space pirates, emergency crash landings, wild fires, and saving the day when you're already injured.

Cameron Mitchell spends a week in Atlantis, and learns a lot about his old buddy, John Sheppard.

Just because they’ve been sent back to Earth, doesn’t mean the adventures stop. John and Rodney run afoul of McKay’s new project in Area 51 and it’s just like old times. SheppardMcKay friendship. Complete!

Stranded on a distant world, John can only wait for rescue and wonder how life at home passes without him. SheppardWeir

Mysterious ghosts are appearing in Atlantis trying to harm its inhabitants. The race is on to solve the mystery and save Sheppard, McKay, Carson and others from murderous phantoms intend on taking lives. Many get whumped. COMPLETE

For the friends of John Sheppard, it's a race against time when he finds something unusual in the lower levels of Atlantis. Warning: There be Shep Whump here!

A quake traps Sheppard and McKay under ground with a pregnant woman. Shep whumpage, lots of buddy bonding, and the guys learn of a couple new things they never wanted to learn about.

Secret Santa story for Alipeeps. They all have their fears, and in the Pegasus Galaxy, fears are all too likely to come true. Sheppard and McKay whumping, friendship, humor.

Returning home after a successful trading mission, the team is sidetracked when a ship crashes into the forest. The unconscious pilot is a young woman. Who is she, what secrets does she hold, and what was she doing piloting a puddle jumper?

Half the team came back drugged and incoherent. The other half never came back at all. Rodney and Carson are lost on a world in the grip of civil war. Complete.

First season, after 'Defiant One', with spoilers for episodes up to that point. Shepwhump, pure and simple. Well, some McKay angst, too. Complete!

Major Lorne knew that, even on Atlantis, there were some lines you just didn't cross, some rules you didn't break...but rules were always meant to be broken, werent they? LorneOC

Ford didn't understand the major's decision to put an inexperienced, out of shape, egocentric scientist on his team. But he will learn the hard way when his life is literally put into McKay's hands...

Sheppard is stranded on a strange world where people are vanishing, and the team races to find him... and not having much luck at it.

When a scientific mission goes wrong, the Daedalus crashes on an ice planet along with Atlantis's top scientists and a ruthless saboteur. Will rescue come before injuries and the elements take their toll? Complete.

It's a routine offworld mission for Sheppard and his team. Some days, that's all you need for something to go wrong... warning: contains Shep whump!

Captured, implanted with Wraith trackers, released to run and die ... such is Sheppard and McKay's fate. Now all they have to do is find each other before the Wraith find them. And Sheppard has this pesky little amnesia problem... Complete.

The Wraith target their most dangerous human enemy, intending to teach the Atlantians a lesson, but they don't count on the resilience of his friends. CROSSOVER with SG1.

Two days can change a person's life. Spoilers for Honor Code

Sheppard becomes the pet to an unusual, sentient being. But life on the leash isn't very pretty. Starts out seeming funny, but doesn't stay that way.

Complete. Sequal to “Strange Inheritance.” What happens when you are a link between the Ancients, and Atlantis' current population? A routine expedition goes routinely awry. Chap. 14: Reflections and new starts

All Sheppard wants is to get some sleep, but instead ends up lost in the basement of Atlantis with Zelenka.

COMPLETE A visitor to Atlantis is a surprise for everyone and changes Colonel Shepherd forever. Reviews appreciated.

The first couple of days on Atlantis—the new arrivals find some dangerous surprises in their new home, and Sheppard has to choose the members of the flagship team COMPLETE

John never thought his coming to Atlantis would lead to him becoming a father of sorts, not that he's complaining.

Complete. When Tony and McGee are in an accident, they have to work together to get out alive.

Someone is targeting the Atlantis science team, beginning with McKay. (Updated 1/16/2017.)

What happens when Atlantis encounters a Pegasus Galaxy virus? Can Beckett figure out a treatment, and at what cost?