A number of cops have been randomly abducted before they are later found dead days later. When one of them is eventually taken, Team One has to work against the clock to find him before he also becomes another casualty. Sam whump.

Sam and Greg are hurt and alone…and just trying to make it home. Will they find help in time or fall victim to the deranged killers. Fatherly Greg. Sam wump.

Alone, injured, and on the run. Who is this stranger and what is his story

After a Hot Call gone wrong and a debriefing from hell Sam bikes home only to end up in the clutches of a killer. Team One scrambles to locate Sam as he struggles to survive not only his physical injuries but the torture in his mind. Sam Whump/Team fic Chapter Four Edited Version Up!

From behind him a guttural growl rolled out, the emptiness of their barred cells only emphasising the threatening sound. Sheppard froze and Rodney's jittering and complaining instantly stopped, his eyes widening at the sound. 'I'll figure something out...I promise.' When meeting an advanced race of aliens the team discover things are not always what they seem...the hard way.

Darkness was hovering on the edge of his awareness. Threatening to swallow him. Another punch, another question, another threat to kill him if he didn't start talking soon.

One of the team is missing...will the others find him before an old enemy exact his revenge

John and Elizabeth are trapped in a cave-in after an earthquake. Their team tries to save them before it's too late. Gratuitous Shep Whump.

Rodney McKay can never forgive himself for the 'death' of a friend.

Sheppard has to confront his worst fears when he fails to keep Rodney safe. Shep & McKay whump. COMPLETE.

People tell stories about the Time Before. They tell stories, too, about magical creatures with long, fair hair, who can turn you to dust in an instant. But John Sheppard has never been one to believe in stories... AU written for the gen ficathon on LJ.

Sheppard and the rest of his team travel to Sateda to strike up a new alliance in their fight against the Wraith, but not all is what it seems, and Sheppard soon finds himself fighting for his life. Set early season 2, slight time-shift AU.

When John’s team is captured, John is tortured for information. Things don’t get much easier, even after they escape. Written for the 2nd Annual Ficathon at ShepsAtlantis.

Sheppard reaches his limits when he's captured by a group after the city of Atlantis. Prequel to the story, Going Home. Warnings: some torture, Shep whump.

Four people awake separately in the ruins with no memory of who they are, and there is something in the darkness, and it wants them. Team angst and Shep whump.

A disastrous mission tears the team apart, and for John and Rodney, nothing will ever be the same again. Set in late Season 3, so beware of spoilers. Gone AU for John's backstory now that season 4's Outcast has aired.

Speculation on what happens after the end of The Last Man, so spoilers through the end of season 4. This is based on an art concept from the first episode of season 5, so some may consider it spoilers for that as well. Shep whump, Ronon/Shep friendship.

Sheppard is captured and to be a slave to the wraith. It becomes more than a matter of survival, but also a matter of keeping his sanity.

A visit to a beautiful planet has disastrous consequences for John Sheppard. The team races to find out what's wrong with him, but the answers they seek may be buried deeper than they imagined. Shep whump. Minor spoilers for Common Ground.

The team is captured by some acquaintances of Kolya, who just may have driven Sheppard over the edge in their attempt to find Atlantis.

Four went out, and three came back. Sheppard has vanished, and the rest of his team lies injured. As Sheppard and his team fight their own separate battles for hope and survival, the true danger may be different from what any of them expect

John is sent back to Earth to recover from his latest set of injuries and decides to visit his father. He is very surprised at the homecoming he receives.

Now complete: Sheppard disappears on a mission, and is mourned as dead. But then he comes back. Friends become strangers, strangers become enemies, and Atlantis itself could fall, unless a group of people can recover what was lost.

The nightmare is over. It's time to go home. The team's journey back to Atlantis. Team fic and whump.

[Complete] Sheppard wakes up to find himself in a medical facility on a strange planet, with no memory of how he got there, and only a tenuous connection to home.

John Sheppard returns to Atlantis alone and struggles with the fact that he left his team behind. Mostly Shep whumping, some team whumping. Friendship only, no slash

John is captured by aliens and experimented on. This is a creepy one.

On a desolate alien planet, John Sheppard is lost in more ways than one.

When John is trapped without food or water, he must take drastic steps to free himself.

Even in the darkest hour, one is never truly alone. John whump in a bad way, nasty team angst, and lots of friendship.

Sheppard is stranded on a strange world where people are vanishing, and the team races to find him... and not having much luck at it.

After enduring terrible torture, Sheppard becomes obsessed with a coloring book, and Rodney doesn't get it. Friendship story. NOT SLASH!

John hates it, doesn't even know it's happening to him, but pity is what's going to save his life. Shep whump. Team angst, better summary inside.

Obsessions are unhealthy. And so is being on the wrong end of an obsessive's experiment. Yep, good times indeed.

How far is John willing to go to protect? Heads going snickersnack, and genetic impossibilities. Oh, and don't forget the terrible physical trauma. John's not a happy man.

Kolya has a plan to exact restitution from Sheppard for his crimes against the Genii people and the Colonel ends up paying a high price.

This is a sequel to Mind of a Child. As John continues to explore his connection to Atlantis, he discovers that she is more than just a city and she has a lot to teach him.

Sheppard is the subject of an unauthorized experiment and he isn't having much fun. A little ShepWeir in places. McKayShep friendship stuff as usual.