Summary: from the game Full of Cybertron both ships made it through the portal. But both end up on two different planets. The Ark crashes on Naboo and the Nemesis crashes on Mustafar.
On the molten lava planet of Mustafar a lone dark figure looks to the sky. Watching a alien ship about to crash on the surface. With a sinister smile he says "at long last".
On the peaceful planet of Naboo everyone looks to the sky and sees a fire ball coming down. People screaming in fear because this fire ball was going to crash on Theed. As if their prayers where answered the fire ball changed corse into a mountain before It crashed everyone swear they thought they saw 5 gigantic engines with blue fire.