OK I was initially imagining this chapter would be a lot longer but then I realized I should just have two segments one of Jonathan's POV and one of Yuki's POV and Yuki's Sensei finally appears in this chapter I should note he does appear similar to the Ancient One with a long beard (Which Ancient One had during Hamato Yoshi's childhood) I'm just going off of how the DM described him in the games and he never provided a proper sprite for him he could be related to Ancient One possibly another one of the Ninja Tribunal's previous disciples

Jonathan's POV

As Jonathan came to…He moaned for a few moments, squinting in the harsh light, the last thing he remembered before he fainted was he was being dragged away by two monstrous Turtles…He remembered there was a monstrous rat there as well…Even as he was blubbering like a baby he figured being eaten by monstrous vermin was probably better than whatever Noble had in store for him so he let himself black out hoping there wouldn't be too much pain when the time came…

However, he felt himself to be laying on a…decently soft bed…He felt only his jacket and shoes had been removed, but he was still plenty covered by his long sleeved shirt and pants…

He heard a voice! Speaking in some foreign language…Sounded something like Japanese…Jonathan opened his eyes blinking a few times…All he saw was ceiling.

He seemed to be on a sofa bed, he backed up a bit so his head was resting on the sofa's back cushions…There he saw it…One of the Turtles…One who wore an orange mask…Laying on a table…Covered in flowers…It looked like a funeral…A strange short and squat little man with a long white beard had his hands on either side of the orange banded turtle's head he was chanting something…And some strange…Mystical breath was exiting the Man's mouth and entering the mouth of the Turtle…the Turtle began breathing more rapidly as this strange breath entered him, that was when Jonathan noticed this Turtle's right arm was in a sling…That was when Jonathan remembered in the fight between the Turtles and Noble's Mutant Hounds, this Turtle got his hand chopped off! Jonathan couldn't see where the Turtle's hand would be it was covered by white cloth.

Finally the ritual seemed to be completed and the strange little man said "I have done all I can, the rest is up to Michelangelo…"
That was when the little man, the rat, and two other turtles, one with a blue mask and one with a red mask turned and noticed Jonathan had awakened.

"Ah…" The Rat said in a Japanese accent "…You're awake."

Weak and feeble Jonathan felt he still tried to back up further and curl up like a frightened child but then as he tried to pull his right leg toward himself he finally noticed the packs of ice on his ankle, he remembered it got twisted when the wall inexplicably exploded…

All right…Maybe this creatures didn't want to kill him…

"What do you want?" Jonathan asked

"Information." The rat said bluntly…Well Jonathan could appreciate being forthcoming about what they wanted.

"You were under the employ of this Judith Noble and we want to know why she would hire a notorious criminal like you because we fear it may concern us as well…" The Rat said

"So…" Jonathan said "…You creatures have heard of me…"

"Oh please." The red masked turtle scoffed in a heavy Brooklyn accent "You Gotham Rogues were like our regular Halloween Horror stories always watching how you guys made Gotham to worst city in America!"

Jonathan awkwardly chuckled and wiped some sweat away from his brow "All right, all right I get what you're saying…Don't flatter yourself…And you're right…Noble's plans do concern you…I met her pack of Mutant Hounds earlier she created them to hunt 'Wild Mutants' and bring them to her so she could study them."

The red masked turtle turned to his brother "Great, just what we need," he grumbled "Lady Bishop!"

Jonathan remembered hearing Noble mention a 'Bishop' earlier as someone she competed with the get Mutant Animals before he did.

Then he remembered what he had learned, the thing that had been the reason he was trying to escape without Noble's notice in the first place.

"But that is ultimately insignificant compared to her ultimate plan!" Jonathan said "I realized what her plan for all life on Earth is…For Humanity she has an insane plan to attempt to 'liberate' them from their physical bodies…I realized from looking at her plans she wanted to use my fear toxin to make people terrified of their own bodies as if they were covered with filth and beg to be liberated from their bodies…To be cracked open like nuts and release some shining pure mind underneath!"

The two Turtles shuddered and stroked their shells, Jonathan realized, that Turtles being unique among the animal kingdom as the one creature that has both an internal skeleton and an exoskeleton in the form of their shells, he was probably triggering ancestral memories of being crushed by crocodilian jaws or being caught by a bird of prey who would drop them on hard rocks to break open their shell like…Nuts…Then he noticed the blue masked Turtle had a crack in his shell just behind his shell…

Just then, Jonathan's stomach gave an enormous grumble…He realized he didn't remember the last time he had something to eat…Had he really had nothing but tea these past 48 hours?

"Perhaps we should all have something to eat." The Rat said

He went to the kitchen and brought out bowls of something.

"It's called congee." Splinter explained

Really it was a kind of savory rice porridge, adorned with some herb leaves for garnish, Jonathan took the spoon he had been given and tried some, Hmmm…It had been made with a vegetable broth…Jonathan wasn't a terribly finicky eater…I mean he regularly ate the food of Arkham…Actually he was known for preferring his food quite plain, he was a real eat-to-live-don't-live-to-eat kind of guy really what he couldn't abide was sickly sweet candy and other cheap junk foods…But this…He wouldn't mind eating this for breakfast…He'd much prefer it over how American's normally take their porridge with brown sugar and raisins…

"Now…" The blue masked turtle said "We need to get to the issue of how we can ensure you won't escape or try to betray us…"

Jonathan gulped "Oh please!" He said "Do I look like I can get away with this ankle?!"

The Turtles and the Rat's eyes narrowed like 'Don't think we're stupid'

Jonathan realized these Animals were more intelligent than a lot of the humans of Gotham!

Yuki's POV

The reason Don wasn't with his brothers or Sensel was…After returning to the lair…Don quickly ran into the nearest sewer to be alone…I couldn't see he was on the verge of a break down, but before I could follow him, I had to wait for my Sensei to come to the lair, bringing a fresh change of clothes as the nightgown had gotten dirty going out in the storm, now in a fresh change of ninja clothes I felt already healed a lot more even if I still had to walk with a crutch.

Fortunately Don hadn't gone far, I found him curled up on the platform by the water, facing the wall…Bawling his eyes out.

Initially I believed he had run away to cry because it was some 'boys don't cry' thing and he was just ashamed to cry in front of his family

I hobbled over as closely as I dared and said "Hey Don…It's gonna be all right…Mikey's gonna be OK…My Sensei…He knows a lot of…"

"Yuki…" He said muffled by his hands "…You wouldn't understand…"

"What wouldn't I understand?!" I asked genuinely confused because I had no way to know what he was talking about "Is this just some 'boys don't cry' thing."

"No!" He barked so harshly I jumped back with my tail floofed

"Please Yuki…" he moaned "…Just leave me alone."

"I can't." I said "Because I know you're in danger from whoever hired Scarecrow just like the rest of us…So I can't leave you all by yourself…"

Don grimaced in defeat and returned to crying, with his face covered.

Putting down my crutch I crept over to him…My feline instincts taking over…I tried to…Lick away his tears…

Don violently jumped away "What the Shell are you doing?!" He asked

"I'm sorry!" I said quickly "Please understand I wasn't trying to make a pass at you…It's just…My cat instincts…Sometimes they activate when I'm stressed…I was treating you as if you were another Cat in my kindle…You know how cuddly cats are with each other…"

And that was when Don truly realized how different I was…We may have been similar levels of Anthropomorphized physically…But he saw now that mentally I was a lot closer to my animal instincts than he was because of the different way I was mutated…"

And I think that was part of the reason he relented

"All right…" He said "…I'll tell you, but first you have to promise me you won't tell anyone what I'm about to tell you…"

I realized how important this was "I swear on my honor…" I said the most important oath a ninja can make…

Think I'll cut to after Don Finishes telling Yuki the tale of SAINW for next chapter as this chapter is long enough I think I conveyed the emotions I wanted to convey