EMS(he kills itachi and takes his eyes),Wood Release(hashiramas cells),Rinnegan,Ice Release(Hakus corpse in wave),a mangekyo ability like amaterasu only with black ice instead of black flames,God like Water and Wind affinitys like the nidaime hokages water affinity only with both water and wind and later ice(it's a combination of wind and water),Shikotsumyaku(Dead Bone Pulse Kimmimaros cells),Six Path Yin and Yang chakra(the Sage gives him both halves of his chakra instead of only one like in the manga or he takes the chakra by force),in the manga the Sage of Six Paths had two sons Indra and Asura there bodys were destroyed but there Chakra reincarnated into into there descedants Madara is Indras Reincarnation and Hashirama is Asuras Reincarnation after there fight at the Valley of the End which Madara survived though no one knows Madara injected himself with some of Hashiramas cells which he got without hashirama knowing since Madara is Indras Reincarnation and Hashirama is Asuras Reincarnation by injecting himself with Hashiramas cells he unknowingly mixed Indras Chakra with small bits of Asuras
Chakra thus gaining chakra similar to Hagoromo which later on when he was a old man caused him to awaken the Rinnegan(not like many people think just mixing senju and uchiha blood) after both Hashirama and Madara died Indras and Asuras chakra Reincarnated into new people Asura Reincarnated into Naruto Uzumaki(the uzumaki are descedend from the Asura like the Senju) and Indra into Sasuke(Sasgay) Uchiha(Emo) if naruto took sasgays eyes and implented them into his eye sockets and evolved them into the mangekyo and then took Itachis eyes and swapped them with his own(Sasukes) eyes thus awakening the Eternal Mangekyo Sharingan(EMS) and later on the Rinnegan
This is an Idea by Gemini-Spark, so give him the Credit Due to Him.