Just after Atlantis's arrival on Earth, John's life takes a happy turn when he suddenly gets custody of his 13-year-old, genius daughter, Rebecca. The impact she has on the lives of everyone on at Atlantis quickly becoming apparent. With this and a new enemy surfacing, threatening the very survival of humanity, John has more to fight for than ever before.

Following the events in Common Ground, this story explores what might have happened if Sheppard's team had shown up to rescue him five minutes too late. Kolya's wrath knows no bounds, and Sheppard's fate lies in his hands. Dark themes exploring torture, angst, and lots of Shep whump. Read with caution.

In S5 Ep15, Remnants, an alien pod is discovered and members of the expedition experience hallucinations. Weeks have passed and John Sheppard hasn't told anyone about his torture at the hands of his old enemy, but can't stop thinking about the fake Kolya's words: 'You torture yourself every day.'

Things get festive in Pegasus.

Deux soldats qui s'ennuient sur un vaisseau, Ronon, il y a longtemps sur sateda... Tout comme les rumeurs stellaires, vous trouverez ici un recueil de différentes nouvelles, se passant à différentes époques et en différent lieux. En revanche, place ici à la sensualité, l'amour et le sexe. Bienvenu dans le pendant érotique de mon univers!

Post The Return. "You hugged the General? Is that even allowed?" John&Elizabeth friendship. Oneshot.

Aria Victus had lived her entire life away from any humans. Her only company were the Wraith. Abandoned by her parents on a strange planet, she had survived the wraiths, the cold and her loneliness. One day, three strangers, humans like her, arrived on her planet. They wanted something she possessed and they had something she desired. John Sheppard/OC (slowburn) [Start Season 2]

Some secrets should stay buried and digging them up could have consequences. Alex Moore didn't care. Her entire life had been full of secrets and shrouded in mystery, but what will she do when she finds out just how deadly those secrets really are? Can she change the tide of war against the Wraith or is Atlantis's fate doomed to repeat itself once again? S1 on w/storyline changes.

A funeral and a conversation. One Shot

John Sheppard was the best of the best and the entire world knew it. He has the life he's always wanted, but he's trapped, living a lie and he doesn't know what to do; until he's poached by a billionaire who wants to have some fun; and beat his opposition while he does it. Here he meets Rodney McKay and his life will never be the same. Completely AU, John/Rodney Slash

A completely alternate reality where Rodney and Sam have been best friends since childhood and get contracted to the SGC to help Zelenka. Mitchell and Jack have basically swapped roles and ages, the Atlantis expedition goes ahead with a few extra people and John and Rodney rescue each other from their lonely lives. Slash, you have been warned

What happened in between John telling Woolsey to come and get them and the scene in the infirmary at the end of season five's episode 'The seed'. A tag for The seed.

Nobody looks at the guy in green. Chuck kind of prefers it that way. / Pairing: John/Elizabeth

'He regretted not listening to the stories of the villagers at the tavern they visited earlier now. They'd warned his team not to head out for the Stargate until morning, because monsters lurked in the dark. But, overconfident as ever, he had let Ronon assure him it wouldn't be anything they couldn't handle.'

Lorne swears there's an explanation.

The Wraith are defeated, Atlantis has returned to the Pegasus Galaxy, and Earth is stronger than ever. However, victory and being on top come new challenges and dilemmas. Where will the Tau'ri draw the line? Is it justice, interference, or imperialism? How will Earth and Atlantis deal with their new status as de-facto hegemons filling in the shoes of the Ancients themselves?

A new linguist travels to Atlantis and finds herself torn between her growing feelings for Doctor Beckett and the threat of an insider, set on finding Ancient technology hidden deep within the city. Can she keep her friends safe and survive the growing threat that seems to come at her from multiple sides? (Just writing for fun guys! :))

"This is the stupidest thing we've ever done."

Rodney stumbles across Major Evan Lorne's studio, sees some of his art and draws a certain conclusion. But what does he care if the artist-Major's having a torrid affair with his commanding officer? It's no business of Rodney's, is it? What difference does it make to him? None. None whatsoever. [Art for both chapters is on AO3]

Just a random nightshift for Jennifer, or is it? Carson is always around somewhere. Even if only in her thoughts. Written for the WA Night Owl Challenge

Teyla called out to him as he headed to his quarters, "John how do we know that Michael is really dead?" Did they ever find Michaels body at the end of the episode "The Prodigal," and surely John didn't walk away from that fight with Micheal without injury.

"Vegas" Universe: Police Detective John Sheppard joins the Atlantis team, but thinks it's not him they really want, it's the other John, the hero John, Ronon's BFF, McKay's idol. Figures that, the sooner they realize he's not him, the better off they'll all be. No Slash.

While visiting an Ancient outpost, the team has a chance to come to terms with what was lost, and also to appreciate what they have.

Un traqueur chassant fidèlement pour sa reine, une jeune femme sur le point de devenir Tokra, le déchirement de parents dont l'enfant est morte... Une suite de nouvelles se déroulant dans l'univers parallèle que j'ai crée avec au-delà des étoiles, ma principale fan-fic sur stargate Atlantis. Beaucoup de wraiths, et d'OC.

With nearly everyone away on leave, Atlantis is almost destroyed, and it is up to John, Ronon, and Zelenka to save it.