Tokyo-3 isn't just the target of giant extraterrestrial creatures, it is also the home of MBI and their rather odd Sekirei plan. On a small shopping trip, Shinji accidentally gets thrust into the mix when he stumbles upon a fight in progress. Some people just have no luck.

The 12th Angel teleports Shinji to Shinto Teito, where he sets off a chain of events that will completely disrupt Minaka Hiroto's plan to ascend to godhood.

Years before stepping into Eva-01 Shinji spent a few years living with the strong willed Takami Sahashi and her family and during his stay met the powerful Sekirei 01 Miya. How do those years and meetings affect the Third Child of NERV? After the defeat of the Angels what awaits Shinji as he visits Tokyo-4? And what will he and his flock do when old ghosts crawl out of the shadows?

The world has barely recovered from the war with the Angels. NERV's narrow victory of the Angels gave rise of a new power, a pharmaceutical company known as MBI. With a madman at their helm MBI unleashes an alien race upon an unsuspecting populace, forcing NERV to race to contain the problem even as other far older and fouler powers return in the midst of that secret tournament.