When mysterious aliens kidnap Sheppard and use him to try and take over Atlantis, it's up to the team to save him. Inspired by "The Daedalus Variations," this is the AU take on what the team was doing fighting the aliens on one of the Daedalus ships in the alternate timeline. Lots of Shep whump and team angst to follow ...

John sheppard is given command of Atlantis and seeks to do what he can to embrace his new role as the Guardian.

He had no idea who he was or how he'd ended up on the chunk of rock he was on. But in the back of his mind, he knew that someone was missing him and they would be searching for him. With the help of his new friend, he knew that he must somehow survive until help arrived. An AU for season five's 'inquisition.'

Evan wants to transfer to Atlantis. Caldwell wants to make sure that Evan knows that he will always have a home.

Tom Giacometti, un jeune wraith élevé par une ancienne marines du SGC est devenu, un peu par hasard, un peu par chance, le nouveau capitaine de l'Utopia, fleuron de la flotte Ouman'shii et précieux vaisseau lanthien capable de traverser le vide intergalactique. Bien que involontairement fondateur des Ouman'shii, il a encore tout à prouver, et tout à découvrir... Mon AU régulier.

A distress beacon rang out on the planet, they went to investigate, thinking they would find nothing. What they, no who they found, were long presumed dead. Now they stand before them craving to the place they once called home...

After a run in with a unique device, Sheppard, McKay, Ronon and Zelenka end up on a body swapping nightmare.

ALLIANCE FIC – 2 weeks after the events of 'Interlude 4' and Atlantis continues to search for Janus' secret lab; Teyla, still feeling slightly unwell, is aboard the Sythus on its way to hunt down the elusive Skerti out beyond the Alliance border. And in the Training Facility, Oneakka continues his recovery while struggling with new developments regarding Seeal.

Atlantis is back in the Pegasus galaxy and everything is changing. John decides that he can't deal with it, so he decides to go and spend a few days with Carson, who has recently left Atlantis to treat the sick and injured off-world. With too much to drink and a black spider, things don't go well for John and he ends up back on Atlantis in the infirmary.

Sheppard and his team (sans Teyla) are offworld and run across some hidden ancient ruins. The next moment, they are in Tampa. Sheppard was hungry, what can you say...

The Atlantis Expedition have Captured some Replicator warships and are using them to shape the future of the Pegasus galaxy and their War against the Wraith. See how the Atlantis Expedition Begins to use their own Human-Replicators to help in their war against the Wraith and discovering New/Old Ancient warship designs of ships to fight the wraith.

Créer une nation est une chose, la faire perdurer en est une autre. Pour régner sur un peuple d'humains et de wraiths, réunis par un espoir de survivre, quoi de mieux qu'une reine wraith avec un coeur d'homme ? L'empire Ouman'shii existe, mais il doit encore créer son avenir. Ceci est le récit de l'avènement de son immortelle impératrice, Ilinka.

Sheppard's team is headed back to Atlantis when everything goes terribly wrong. Stranded deep in an unfriendly forest, danger is closing in and they must rely on each other to survive until rescue comes. Set in mid Season 3. New Chapter 35 created to tie up a loose end.

Todd comes to Atlantis to discuss alliance, but Sheppard is off world on a mission. Major Lorne is left keeping him company, in addition to his regular XO duties. Things dont go as planned. Todd/Lorne, after series finale but before Legacy. Rated M for language, eventual light smut, slow burn fluff

When Ronon Dex is freed from being a Runner and brought back to Atlantis, he is confronted with culture shock unlike anything he ever expected. Grace Becque is an anthropologist with the expedition who is content to remain in the background. When the two are sent on a mission together, Ronon is tasked with keeping Grace safe in a tricky situation with unexpected outcomes.

Episode I: Nine months after their return to Pegasus, Atlantis is desperate. Increased wraith attacks and IOA scheming have left the city barely stable. But when the aid General O'Neil sends them turns out to be a woman from Sheppard's past, her arrival has resounding consequences that may prove invaluable or, they might just make everything worse...

Daniel is confronting the Vanir leader when the armoured alien reveals a startling secret.

She wasn't meant to be alive. He was never meant to know. A secret, is was she was, born from a human woman, to a species that dominated her galaxy. Hidden away until those people disturbed them. Woke them and now she was in fear of discovery. Her mother was gone, and she was growing sick, but Atlantis might help or kill her. Her "father's" people might kill her too.

Soulmates exist! When it's discovered that John Sheppard has the Ancient gene his twin's DNA is tested and found to carry the Ancient gene as well. Doctor Weir immediately asks John to have his twin fly back home to see if he would be willing to go on the Expadition as well. Randy, to Doc Weir's surprise is John's twin sister who is one of the few people born with two soulmates..

Toto jsou události co se staly potom co Atlantis přistála na Zemi. Začátek tohoto příběhu se odehrává v budoucnosti, ale pak se přesuneme do minulosti. Budou zde i skuteční žijící Antikové a jedna prastará civilizace.

"Vegas" Universe: Police Detective John Sheppard joins the Atlantis team, but thinks it's not him they really want, it's the other John, the hero John, Ronon's BFF, McKay's idol. Figures that, the sooner they realize he's not him, the better off they'll all be. No Slash.

John and Teyla are back in their own time after their adventure in the future. Rodney is determined to find Arastica in the past as is John. John has the coordinates for Sheppard's planet and Woolsey's given him the go-ahead to find it. Wraith, visitors from the future and time travel all add up to a bad week for John and the team. A sequel to 'A glitch in time.

Takes place after Critical Mass (Episode: 2.13) How would Caldwell have been if he'd had a daughter and she'd figured out the code?

She was an ice queen. He was the unflappable Major. She caught his eye but could he melt her frosty exterior.