Please excuse any mistake regarding anything with the Orange Islands. That season finished almost two years ago and I can barely remember it.

Tropical Crisis
Chapter 1: Old friends and enemies

While Mike was rebuilding his army, Haytham was running through the streets of Mandarin Island and was for no reason at all recalling everything that has happened from the last Anti-pokemon war until this point on:
After the war, Haytham went to the Indigo league and competed, coming out 9th place. Aseel on the other hand departed to Johto to compete in the Johto League. after Kanto, Haytham decided tackling the Orange Islands. However, Haytham noticed that he was one pokeball short on his belt. He needed a sixth pokemon to stand a better chance at the Orange League so when he reached the Johto border to wave goodbye to Aseel he found a mareep which he easily caught and trained into Flaafy and later Ampharos. He trained all his pokemon(except Ivysaur) until they evolved. Even though Ivysaur is waaaaaay beyond his evolution level Haytham didn't want to Evolve him because he liked him the way he is. With the help of Fearow, Haytham set out for the Orange League and beat Cissy, which despite regular confusion, could be competed against with any long-range pokemon, not just water types. Now Haytham is in Mandarin Island is going to catch a ferry to Navel Island, the location of the second Orange League Gym.
Haytham(thinking):" I'm going to be late! If I don't get to the ferry now I'll have to....."
Haytham's thinking was cut off when he smashed into a person in front of him and fell to the floor.
Haytham:" I'm very sorry, I wasn't looking and..."
Haytham went silent as he recognized the person as Ali, his friend from the first Anti-pokemon War!
Haytham:" Yo Ali what's up?"
Ali:" Nothing really. I just decided to take up Eevee training."
Haytham:" Really?"
Ali:" Yeah, and after years of collecting stones and eevees, I finally have all five eevee evolutions plus an equally powerful eevee."
Haytham:" Cool, I only heard the most daring trainers take up eevee training. By the way, what happened to your old pokemon?"
Ali:" I left them with my family back in Goldenrod city. Whenever I stop by there I train them in the forests around the city, but my eevee collection is what I take in my journeys. By the way, weren't you in a hurry for something?"
Haytham:" OH yeah! The ferry! Let's Hurry!"
Ali and Haytham got to the ferry station just on time and paid for boarding tickets. The ferry took off minutes after they went into their cabins. A brochure under Haytham's bed told them that their journey will take a bit more than 1 day. 2 hours later...... Haytham and Ali were the only people in the lower decks. Everybody else were in the upper deck trying to catch a glimpse of water pokemon.
Haytham:" ALi, a lot of the other passengers on this ferry look like tourists rather than pokemon trainers. How is that?"
Ali:" According to this brochure the ferry stops by Tangelo Island after Navel Island. And Tangelo has that pokemon park and all..."
Haytham:" Right."
Suddenly the whole ship rocked and stopped.
Ali:" What happened?"
Haytham:" I don't know, let's check it out."
Haytham and Ali went out of they're cabins and went up the stairs to the upper decks and the side of the deck they were on was empty. Haytham peeked around a corner and saw three armed men holding AK-47 Assault rifles up to the passengers. Behind them in the water was a submarine.
Man:" Okay all of you get into the sub and follow my orders. all actions to resist will be followed by bloodshed!"
Ali:" Oh my god there taking hostages!"
Haytham:" We have to use the element of surprise while it is available. Scizor Go!"
Ali:" Flareon Go!
Haytham:" Scizor, disarm those men, but don't hurt them!"
Ali:" You too Flareon!"
Flareon and Scizor nodded. Flareon jumped out of the corner and fired a flamethrower at the first guy's gun. It turned red.
Man:" Youch!"
The Man dropped the AK-47 and it's metal parts melted and wooden parts turned to charcoal. As for Scizor, he got to the 2nd guy in about 2 seconds and used his scissor claws to chop his gun in half.
Haytham:" That takes care of the first two, but wheres the third guy?"
Suddenly somebody tackled Haytham to the ground and held a knife to his neck.
Man:" Nobody moves or this boy gets it!"
Ali just stared at the scene. Even Scizor and Flareon were powerless to do anything.
Voice:" use your Vine Whip!"
Before the man could react two vines hit his hand and sent the knife flying into the sea.
Haytham kicked the surprised man away and looked behind him to see a boy with a Bulbasaur to his side.
Boy:" Hey, I'm Mohhamed, I saw you in trouble back there so I decided to help."
Haytham:" Thanks."
Haytham, Ali, and Mohhamed recalled their pokemon and a coast guard boat came by and captured the three men. Mike's base.......
Mike was in a office reading mission reports when the door slammed open. A man came in.
Man:" Sir, we have a problem."
Mike:" What is it?"
Man:" Our mission to hijack the Mandarin-Navel ferry was sabotaged. Our men tried to take the passengers hostage but the men themselves were captured."
Mike:" WHAT!"
Man:" A camera on our submarine took a pitcure of the scene and found this."
The man pulled a photo out of his pocket and handed it to Mike. On it was a pitcure of Haytham and Ali and their pokemon fighting off the men.
Mike:" That boy....., he's the one who defeated me in the first Anti-pokemon war. I never expected him to be in the orange Islands. There is one solution to this problem. Full-scale War."

To Be continued.....

I'm sorry I was late in writing this chapter but:
1. Nobody reviewed so I decided not to write for a while
2. I had a very busy few months, and now with end of year exams coming close I'm gonna be slow in writing chapters again.