For reference, the retirement party mentioned in ch 2 was for Sam, not Janet. Janet is still alive - i'm going canon up til Affinity, however Hero's 1 and 2 did not happen and Janet is alive and well and still at the SGC.

She woke up an hour before her alarm went off, a habit ingrained in her after years of being in the Air Force. It had come in handy when they were on alien planets and it was her turn to be on watch. Jack teased her mercilessly about how hard it was get Daniel up, but that she would be out of her sleeping bag as soon as someone did so much as whistle. She listened for a minute to the sound of her babies sleeping, and then got up and packed up their belongings, ready to run again. Only, before she could wake them, she heard a loud bang on the door. Her knees buckling as she realised that he had found her; she stumbled away from the figure in the doorway that came at her.

"You think you can run from me again? You think that you can get away from me? You're nothing but a two-bit fucking WHORE!" He screamed as he came at her.

"Pete, no, please, no…" she whimpered as he advanced, fist raised. He hit her, one solid backhand across her cheek, and she fell against the small night table with a sickening crack coming from her wrist.

"What the fuck do you think you're doing Samantha? Why do you run from me? You're mine, you know I'm gonna find you."

"Please Pete, the girls are sleeping…" she pleaded, trying to calm him down.

"You think I care about that?" he yelled, kicking her in her side. "Time they learned about their bitch of a mother isn't it?!"

"Pete…no…"

Luckily, when Pete had stormed in he hadn't closed the door, and from the doorway Sam heard the most wonderful sound she had ever heard, the unmistakeable sound of a shotgun being cocked.

"Listen mister, I don't know who you are but I won't have this going on in my motel. Now, you're going to come with me and leave the lady alone…"

"She's no fucking lady" Pete snarled, but knew that he was beaten. As he walked away, throwing an "I WILL get you" over his shoulder to Sam, she shook with the force of the tears that ran through her. Once she could breathe properly, she picked up the bags with their stuff in it, woke the girls and drove as fast as she could away from where Pete was being hauled into a police car. She knew she would be needed to stay and have her statement taken, but she had to get out of there. So, she drove to the only friend she could go to, even though they hadn't spoken in two years. Doctor Janet Frasier.