Okay, ALOT of confusion on Chapter One. Yes, Wally WAS fully transformed into a Magikarp, but only because he was especially bad and a Magikarp hybrid would look just freaky. So anyway, the plot has finally unfolded itself, after, say, three days? It may take up to two chapters to finish the beginning, so nobody actually takes too much action until Chapter Six. Anyway, Chapter Three!
Chapter Three- Shadow Domination: Part One
Leaf's Story
Leaf sprawled herself quietly on her bed. Looking first at her Chimecho, then her Chikorita, she stroked them both and took out a Pokeblock from her Pokeblock Case. Bored, she lazily threw it up into the air, then caught it and put it back into it's "PEZ" container. The tube snap shut, as Leaf looked out the window. Newbies, she thought to herself, who saw a long line of future Pokemon trainers. As usual, she cloaked her Chimecho and Chikorita into their balls, disgused as little blue, plastic replicas of the Blue Orb. A call that cried "Leaf, the newbies are here," signaled that she get down quickly.
Rushing down the steps, Leaf let her emerald hair sway around and just barely skim her ears. Leading the newbies to the kitchen, she held out a large collection of Pokeballs in a tin container. The fun part was that their were no refunds, so the night before Leaf would often sneak in a Magikarp here or there, or maybe stuff in a few with rarer Pokemon like Lapras or Larvitar.
One of the trainers was opened his Pokeball to find a Magikarp. "Hey, what's wrong with this Pokemon?" the kid hollered, and Leaf, not really paying attention to the Pokemon's odd colouring, said immediatly "It's a Shiny Pokemon."
"No, this Pokemon's too dull to be shiny," the kid continued, and Leaf took a quick inspection. It was a Magikarp, but something was... wrong. It's scales were snow white, yet it retained a sickly green crown and tailfin. The tailfin was also edged with a hint of cerulean, and a red ring rotated around it's eye.
"Hmm, kid, you're right, this Pokemon looks especially strange..." said Leaf, still gawking at it. Confused, she took the Magikarp and replaced it with a Cyndaquil, after inspecting it carefully to make sure nothing went wrong. Then she took Magikarp to her room.
It was the weirdest thing she had ever seen. Carefully, she placed it in a fish tank she thought was no longer needed. The container once held Remoraid when her family still bred them, but several "ran away" from home one day, her mother said. One flaw, though- Remoraid can't run!
Magikarp was feeling greedy, and seized the Pokeblock case from Leaf's pocket as soon as she let go of it. Desparate, the teen slammed a garbage lid onto the tank and kicked it. The tank shattered and Magikarp fainted due to lack of water.
Leaf fell asleep quickly, forgetting all about the Magikarp, and woke up several hours later. When she did she saw Magikarp, trying to wake up weakly, and a black blob of... stuff.
"Why, what's this?" she asked, walking up to the blob cautiously. Chimecho quickly took post of sentinel guard. Chimecho glared at blobby, blobby sat like nothing happened. Leaf, thinking this was a rare Pokemon, revealed an Ultra Ball from her belt and flung it hard. The blob glowed brightly for several seconds before blasting the ball and transforming it completely into darkness.
Now two ghost-like organisms appeared. One launched itself at Leaf, the other began to strangle Chimecho. Chimecho used a Psywave attack to fend them off, but the balls seemed immune to any sort of attack.
The first one slammed it's body against Leaf, parylizing her and bringing her closer towards the other, which had caught Chimecho. Both of their bodies felt weaker, and not as firm as they used to be. As they got closer, the two nearly fainted, as the balls of darkness made a pleasent squishing noise and...
"AUUGGGHHHH!"
End of Leaf's Story
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Blue's Story
Latios glided easily along the winds. It was as if he was a boat, and the wind was a rapid moving river, splashing him along Latias, who still had Pokerus. Latias was slaughtering fifty rivals an hour to grow insanly strong. In a few hours, she had grown almost fourty levels, and now that Latios was itching, he felt he might have it too.
Meanwhile, on the other side of the plains, was Blue, a calm, docile female at about the age of twelve. She, too, had Pokemon infected with the rare Pokerus syndrome, and was hoping to defeat several rivals before this was over. Her Pokemon team consisted with only an Espeon, a rare Eevee evolution. Espeon liked it's Pokeball, because it was not to be disturbed inside, so usually Blue skipped many fights. But since Espeon caught Pokerus, well, you know... it's all about the battles.
Blue and Espeon had just finished a particularly difficult fight, against a Salemence and a Misdreavus. Salemence actually seemed addicted to it's Earthquake, in the same sense that Fan Fic writers are to computers. It made the fight especially hard, but was rewarding. Blue was now exhausted, even though she didn't do anything, and dropped a Pokeblock on the ground to attract a fight. But in the meanwhile, Espeon was sucking away at the Oran and Sitrus Berries in Blue's bag.
About a mile away, Latios was yawning, lying down on the soft, cool, dirt when an aroma skipped past him, tickling hus sense of smell.
"WHUZZAT?" he asked himself, he had just sniffed something delicious. He followed the source of the aroma, growing hungrier with each passing moment.
Latios followed the scent curiously and saw a girl sharing Pokeblocks with an Espeon. The Espeon had a red spot on her leg, which Latios recongnized immediatly as Pokerus.
"Hmm... That girl must want to capture me like Jirachi said... But he's taking care of that, so it wouldn't hurt to have just one..."
Without thinking much longer, Latios kneeled at the foot of the girl. Latias was begging about a half a mile away, but her countapart was hungry. No stopping a hungry Pokemon, unless it's one that can't eat anyway, such as a Metapod.
The girl looked at Latios suspiciously before handing him a red Pokeblock. The legendary nibbled it slowly and spat it out after a few moments. He cried patheticly. In near-perfect human language, he said "Spppiccyyy!"
Blue, the girl's name was, now thought she could trust a Pokemon like this, so she fed him more, this time picking a sour one. He swallowed that, but didn't really mind. Blue jumped back in shock, then fed Latios one that was sweet. And after he ate that, Blue dumped the whole case. Latios swallowed them all before spotting an unusual one. Unlike the others, this one was rounded at the edges and was glowing purple.
It charged and knocked Latios unconcious. Blue got up, startled. "Go, Espeon!" she cried. "Use Confusion!"
Confusion didn't even affect the blob. Instead the blob attack Blue and in a bright flash, both Blue and Latios were gone...
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Sorry everyone for not updating soon enough! Writer's block strikes every fan fic writer! Dark Ketchum, you make me laugh!