Agitha is taken from Hyrule to the Pokémon World and her Golden Bugs scattered. Ash and his friends decide to help find her Golden Bugs before they become food to the creatures around.

The first time that the soul of the Legendary Hero was not in a Hylian was also the first time the Legendary Hero failed to stop Gannon - or second depending on the timeline which you consider to be true. At least a hundred year slumber allowed them a second chance to prevent the Calamity, even at the cost of their memories...

During the events of the calamity Ash and Link fall under a 100 year slumber they finally awake to save Hyrule from the brink annihilation.Will the heroes be able to save princess Zelda and Hyrule from the calamity once and for all? stay tuned and keep reading to find out.

Hyrule is under attack. It's almost destroyed, ruined by the Necrozma in Hyrule Castle. Princess Zelda sits in the castle, holding Necrozma back, but she can't hold it much longer. Link, a young Eevee, failed to beat the Prism Pokemon years ago. Now, one-hundred years later, he's ready to try again. (I own nothing) (May include minor blood) (Moves have no basis in actual movesets)

Legend of Eevee oneshot. After the fiasco in Termina, Pichu returns to settle his bet with Eevee. And being Pichu, he screws it up.

When an evil Nuzleaf has caused the moon to fall and destroy the world in three days, you probably wonder how things can get any worse. Here's how: The only one who can stop it is a certain peabrained, time traveling Pichu. Say your prayers, Termina.

Link and Ash have rescued Princess Diancie from Ganondorf and must return her to her kingdom before Ganondorf kidnaps her again. But while trying to figure out Ganondorf's plot, Ganondorf accuses Ash of being worthless without his Poke'mon. And Ash begins to question...if Ganondorf is right.

Ash Ketchum wants to be a Pokemon Master. Linkle Braver yearns to be the next Legendary Hero. Together with friends old and new, they explore the vast, hidden world of Hyrule to challenge the Eight Temple Sages of each major settlement. But like all the Legends before, there's an ancient evil lurking in the shadows of Man and Pokemon.

Ash and Whitney find themselves at Lon Lon Ranch after hearing a song from afar.

After helping out in the War across the Ages, Midna and Agitha are sent back to their own time—except they seem to have been transported to the Kingdom of Spectra in the Ransei Region instead. With the help of the Nō and Okuni, they try to return to their proper home. (Crossover between Hyrule Warriors and Pokémon Conquest)

It's the night of the final round of the #512th Kanto League. Ash Ketchum has won, but when a mysterious stranger in green clothing riding a massive black Charizard by the name of "Volvagia" touches down in the middle of the arena, history is changed. Forever. Rated T to be safe later.

[Courageous Little Ralts] A young Ralts goes on a journey to save his sister, which soon unfolds into something much greater. With the help of a talking boat, he will discover the secret of the Great Sea. (Cover made by demighira on Tumblr.)

Pikachu and Link team up to defeat a mysterious power that could destroy the world.

After seeing no spirit of the Demon King in Ganondorf's heart, the three goddesses have descended to Hyrule and lived with their chosen for seven years. Now, after traveling together through one of Hyrule's temples, they have unleashed creatures that only a Hero from Hyrule's past has experienced. Now, they can only ask "What happens now?"

A random inconter with Mewtwo sends Ash into a land that he is playing on his handheld game, Hyurle. How will Ash return to his world and who will help him?

Linkle, a young trainer from Kakariko, sets out on a Pokemon journey. In her journey with her Torchic, Dinru, she runs into Pokemon Performer, Lana and her Chikorita, Nina as well as Mayor Zora's son, Ralis and his Piplup, Coral. When Team Demise reek havoc in the Hyrule Region, these three step up to defeat them but can they do it all by themselves? [ T - Language & Violence ]

Link is bored. Saving the world left him with nothing to challenge himself with, and his competitive spirit rises from his peaceful Ordon life to revisit the Arbiter's Grounds. Instead, he finds Midna, who sends him off to be free as he was supposed to be. But is that all there is to it? And what's with Pokémon? {Edit: Dropped because I really don't know where I was going with it.}

The son of the Hero of Time travels and tries to save a more changed-looking Hyrule to his father's and is turned into a Mightyena in the Twilight! With the help of a Twilight dweller, he tries to save his homeland while seeing it for the first time ever completely, and he must remove the Twilight to save his friends. Can the twilit duo complete the task of stopping the Dark King?

The end of the Pokémon world is nigh and Arceus with his surviving fellow legendary pokemon must find a new home familiar to him. This is a remake and is the first of the BioStar chronicles. Pairings include Zelink and ArceusxOC.

Aria, a girl from a far away land, is now in Hyrule. She has fled from a bad life and stumbles across a farming village, somehow getting into the troubles with the twilight. (Bad summary, sorry)

Link adventures through the world doing stupid and reckless things. slowly growing a harem of pokegirls he decides to go beat things up and be a badass while doing it. Link x Pokegirls NOT pokemon. LEMONS IN YOUR FUTURE

Discontinued

Link, Oni, and Dark go on an adventure! With pokémon! Rated T for some swearing. Contains Ocarina of Time and Twilight Princess characters.

Gannon has teamed up with Giovanni, and has sent their corrupted pokemon on a rampage around Hyrule

Lillian is a young Japanese girl living in Kanto with her Hylian sister Timber. At the age of ten, Lillian ends up getting a shiny Charmander as her starter and then she joins Team Rocket. Will this mere child bring as much destruction as she says she will?