Here's Chapter 6! I hope I get more replies in by the time chapter 7 or 8 comes. If it ends up going that far that is. Well here's the disclaimer!
Disclaimer- I don't own any Sonic characters because they belong to Sega. The only person I own is MJ. If I did own the Sonic Characters I'd be using up my time playing new video games!

Chapter 6
MJ's gone

Forest area. 3pm 6 days after the Ark incident

"Why did Amy have to say that right in front of him? Why couldn't she have kept her mouth shut!" was the questions that were buzzing around in MJ's head. She was crying and sitting on a fallen tree. The event still played over and over in her mind.

Flashback

"Sorry! I HAD to follow you two! I must make Shadow love you like you love him!"
MJ was about to say something but stopped when she heard Amy say that. She blushed furiously and ran to the teleportation pad and teleported back to earth.

End flashback

"Well there's no use sitting here moping around. I guess I should go tell everyone about Eggman's plan." MJ said to herself. She was about to run off when she saw Shadow running around. She didn't want him to see her so she dove into a bush.
"Where is she? I need to ask her who that fat guy was and something else..."Shadow thought to himself.
"Maybe I should talk to him...No...I can't I have to tell everyone about Eggman's plan." MJ thought to herself. She crawled away from behind the bush, but then she ran into something.
She blinked and pushed her hand against a glass tube that had her trapped inside. Shadow turned around and saw her in the tube. He looked up and just barley managed to dodge one that was coming at him. The next thing he knew was he saw MJ getting carried away in the tube trying to kick her way of off it.
"BWAHAHAHA! MJ settle down. You broke your promise so now I must use you in my plan to create the glorious Eggman Empire!" Eggman cackled. He smiled in triumph and flew away before Shadow could shout Chaos Control and get MJ back.
"CURSE THAT FAT GUY!" Shadow shouted to himself.
"I better tell the others what happened" Shadow mumbled to himself before running off to the Thorndyke residence.
"HEY! WHAT ABOUT ME!" Amy shouted. Apparently she was following Shadow and he forgot about her.
"OOO Shadow I'm going to get you later!" Amy said as she ran after him.

Thorndyke Mansion 3:30pm 6days after the Ark incident
BAM, went the door as Shadow burst into the house at super Sonic speed. He barely managed to stop before flying out of the house.
"Geez Shadow what's the rush?" Knuckles asked after he heard the door break and saw Shadow in the room.
"MJ...kidnapped... fat guy...plan..." Shadow panted between breaths.
"What?"
"MJ's been kidnapped by a fat guy who has plans to take over the world."
"Eggman!" Sonic said as he burst into the room. "He's the fat guy you're talking about."
"MJ's been kidnapped?" Chris questioned as he ran into the room after he saw the door practically explode.
"Do I have to repeat myself 50 times or are you people just slow?" Shadow exclaimed quite annoyed.
"Okay okay geez don't get an attitude." Knuckles said. Sonic just got a huge grin on his face and walked over towards Shadow.
"Yeah we'll help you save MJ. After all, you DO like her." Sonic taunted evilly and Shadow just glared at him.
"SHUT UP YOU FAKER!" Shadow shouted making the house shake.
"SHADOW AND MJ SITTING IN A TREE K-I-S-S-I-N-G!" Knuckles, Sonic and Chris chanted while pointing at Shadow.
"Oh shut up! Are you guys going to help me save her or not?" Shadow asked very angrily.
"Yeah yeah okay. I'll get Tails to set up the X tornado." Chris laughed and he ran away to tell Tails.

Meanwhile

MJ was still trapped in the tube banging and kicking it to get out, but no luck. She tried and Ice blast, but it didn't break her glass prison.
"Oh just give up! That glass is impenetrable, besides you're about to take a long nap." Eggman exclaimed.
"What do you mean by that you fat egg-headed freak!" MJ asked very annoyed.
"Hehehe, good night, MJ!" Eggman cackled as he pushed a button. Gas started pouring into the tube and MJ was knocked out. The gas was sleeping gas and it lasted for a while.

Thorndyke Mansion 4:00pm 6 days after the Ark incident

"Okay Shadow, Sonic, and Amy you guys Chaos Control to the Ark. Me, Cream, Knuckles, and Chris will fly to the Pyramid base and teleport to the Ark from there." Tails explained as he formed the plan to rescue MJ and stop Eggman.
"Why does Amy have to come with us? Why not Knuckles!" Sonic complained.
"Because I'm not strong enough to find off Eggman's robots if we get attack. Neither is Chris or Cream. So I'm going to need Knuckles to help me." Tails replied to his friend.
"Okay we get the picture so let's go!" Shadow demanded. He began to do Chaos Control and he teleported him, Sonic, and Amy to the Ark. Knuckles was about to complain until he decided to just go with Tails.

Space Colony Ark. 4:00 pm. 6 days after the Ark incident

"Doctor, Doctor!" Decoe and Bocoe cried as they ran up to him.
"Sonic, Shadow, and Amy have gotten into the base! What should we do!" the duo asked very worried that the plan might fail.
"Calm down! This is all part of the plan. If they find us I have a plan, so calm down while I make the preparations." Eggman ordered.

Meanwhile

Shadow, Sonic, and Amy were looking around on the Ark for MJ. Amy staying close to Sonic who was trying to slip away from her. Shadow was getting annoyed by the couple and began to speak.
"This isn't working. We should split up. I'll go this way and you 2 can go that way." Shadow said.
"That's fine with me!" Amy cheered.
"Why do I have to be with Amy!" Sonic complained.
"One, I barely know her and she'll complain about you if I'm with her and two, you annoyed me back at the house." Shadow answered and ran off.
Sonic remembered what he did and smiled. Amy took it the wrong way...
"Oh Sonic! I knew you'd want to be with me!" Amy cried as she hugged him. She thought Sonic was smiling because he was with her...
How wrong she was.

5 minutes later

Shadow still hadn't found where MJ or Eggman was. He stumbled upon a room and blasted open the door.
"MJ!" Shadow shouted as he entered he room. Hoping MJ was locked inside. He began to look around and he found another locked door inside the room. He blasted it open too and found MJ still trapped in the tube. With Eggman standing next to her.
"Eggman! Let her go!" Shadow demanded. He was furious.
"Even if I did she wouldn't be able to move." Eggman replied to Shadow. "I knocked her out with sleeping gas."
Shadow was getting really angry now, he wished that Sonic was getting annoyed by Amy and he was watching it.
Well sort of.
"Anyway, I need her to create the Eggman Empire...AND TO STOP YOU AND THAT BLUE PEST OF A HEDGEHOG!" Eggman shouted and he pressed a button. A strange colored ray appeared inside MJ's tube prison and shot red colored waves of energy at her. MJ began twitching and she opened her eyes. She stood up, but something was wrong about her. Her ice blue eyes wear now gone making her eyes white and empty. She looked as if her soul was gone.
"MJ! Attack Shadow now!" Eggman cackled.
MJ shot an ice beam at him, but Shadow managed to dodge it.
"MJ! What happened to you!" Shadow asked, for he was wondering why she was listening to Eggman.
She didn't say anything. She frowned and shot another beam at him. Her happiness and her control over herself were gone.

That's the end of Chapter 6! Please reply only 2 different people have replied and 1 of them only replied once.
Ps. Sorry HikariStar for the trouble I've caused you.