I am basically done writing in the SSB section. So this story will not be finished. I will however summon all my strength, (not really) and give you the lay of the story.
Lay of the story
The evil Mallow forms an underground organization with other pocessed students. They begin to tear the school apart.
Marth and Nabarl, go to Altea castle. There they confront Phantom Ganon and defeat him. Marth then reveals the secret, their army. Made up of Altean warriors.
Master Hand and Crazy Hand discover that all the Wireframes have been destroyed by Mallow, and have to find new guards.
Omega Hand then summons Giga Donkey Kong, and Giga Ganon, to attack the school. Right before they attack Mallow and his group then reveal themselves to the entire school. Well the teachers try to stop them (and fail) Omega's two warriors march forward.
The school looks like it's doomed, but luckily Marth and Nabarl arrive. The fight rages on. Geno then takes on Mallow while Cink takes on Sonic. They both manage to win, but are overrun by the others.
While the teachers struggle with the two Giga warriors, Sora, Riku, and King Mickey finally arrive and help out. Mario then takes both of the Giga warriors out with a special attack.
The Organization is crushed and all of the students need to be sent back (with exception of Sonic and Tails) to their homes.
Classes resume, but Omega is still watching them.
For a while longer many things happen, including a food fight, a tournament, and a trip to the Noka Noka (spelling) beach. Where the couples are revealed, and flashbacks are shown.
We then jump ahead a few months where it is the last week of school, more flashback are shown and Omega is finally ready.
On the second-to-last day, the school is attacked again. Omega has prepared a large army of the students enemies, some are now Giga. The students along with the teachers attack. In the end Omega's army is defeated.
Master Hand then sends the available warriors to take out Omega. Those are; Mario, Pikachu, Link, Kirby, Samus, Pit, Wario, Snake, Sonic, Geno, Sora, and Riku.
They do defeat him, but he vows that he will return, or at least he will have revenge through another way. Confused the 12 head back to the school and warn Master Hand. On cue, an explosion is hear and all the teachers are injured.
Dr. Mario examine them and finds that some may die... him included. There is one way to save them though, wipe their memory and send them back home. Master Hand then tells him to examine them, and send the ones that need to go home, home.
It's the final day and a test, along with a final battle test. The story ends when everyone begins the test, and battle. And when Dr. Mario is about to tell who needs to leave... forever.
I would've eventually made the sequel when all the info on SSB: B was revealed.
And that would be the end of the trilogy, (remember that MtSMtD was apart of this) It was basically a filler for the SSB: B story that we have no clue on yet.
Anyways that's all for this story, the other stories will not be made. I will make two short oneshots, and that's all. If you would like to know about Marth the Swordsman that Did, PM me and I'll give you the lay of that story.