Second Chapter, since they can't handle my enormous list in just one.
Also I'm putting all of these on my favorites so it'll be easier for you guys, as someone requested.
Innocence (M)
by guitarstrings0187
oOo
Life After Engagement
by TheVarietyTrio
FTM Rachel (Transgender) pining over a engaged Quinn. Not yet completed, unfortunately.
oOo
Wait, What? (M)
by Mattmurdoch65
oOo
A Desperate Situation
by BreakfastAtAriz
oOo
Once Upon A Time
by Mattmurdoch65
oOo
Under Your Spell (M)
by LovelyMagickPegacorn
oOo
Lucky To Have You
by guitarstrings0187
oOo
Isn't She Lovely
by thewriterinme
Completed. One of my favorite works, for real. AU Adult Faberry. Rachel goes back to Lima for vacation and meets Quinn and Baby Beth. The plot is really sweet and also very realistic especially when it comes to Quinn dealing with her mom about her sexuality.
oOo
Under Your Spell
by Jstonedd
Harry Potter/Glee Crossover Slytherin Rachel and Ravenclaw Veela Quinn. Jstonedd has a few other works that are really good, so check them out.
oOo
Second Time Lucky (M)
by Mattmurdoch65
oOo
Hard Times (M)
by Mattmurdoch65
oOo
The Librarian
by TheSilentPen
oOo
Simple Parts
by FlyingFleshEater
Okay, another favorite of mine. Rachel and Quinn time travel to the future and I'm sure you can guess who they both end with, wink wink. You'll see Domestic Adult Faberry with their kids and Awkward Teenager Romance Faberry. Overall great fic, It also has prequel. I think. (Just scroll down)
oOo
I Want You To Want Me
by InvisiMeg
oOo
Quinn's Happy Valentine's Day
by LiteratureLover34
oOo
Catalyst
by neverworsename
Completed. Another fanfic that I think is greatly written. Has Intersex Rachel, so if you're cool with that, go ahead. The ending's a bit iffy tho, but overall it's a great story.
oOo
We Make Plans. They Never Work Out Right
by takeanotherturn
Genderswapped Rachel - Ryan is the one that gets Quinn pregnant.
oOo
Suit & Tie
by Jstonedd
oOo
The First Time For Everything (M)
by Mattmurdoch65
oOo
You're Mine?
by Jedi Luka
oOo
Disenchantment
by FlyingFleshEater
Same universe as "Simple Parts"
oOo
Boys Like You (M)
by meat.to.the.wolves
Genderswapped Rachel
oOo
Change of Directions
by jstonedd
Completed. One of my favorite fanfics, i'm not sure why though. New York Badass Rachel ends up in Lima and meets Head Cheerleader Quinn. They have this "will they, won't they thing"
oOo
Still Changing Directions
by jstonedd
Ongoing. Sequel (?) of "Changing Directions"
oOo
Haven't Forgotten My Way Home
by itsfaberrytaboo
Completed. Amazing story. It's in this Dom/Sub Dystopia kind of universe (not in a kinky way). I can't really summarize it but just read it lol. It's a great story, I swear.
oOo
We Go Together
by elliefaucet
Grease Faberry.
oOo
Sweet
by Mattmurdoch65
oOo
Faberry Mini-fic Archive
by TheSilentPen
oOo
All You Need Are Friends To Scare Away The Crazy
by thatoneloserkid
'Perks of Being a Wallflower', but Faberry.
oOo
Losing Your Mind
by jstonedd
oOo
Ironwoman
by thatoneloserkid
oOo
If You're Looking For Trouble
by MandaWeasley
1950s Rebel Rachel meets Square Conservative Quinn.
oOo
New York, Baby (M)
by Kendarrr
oOo
The Whole Nine Yards
by zigzag.zippers
oOo
Full Throttle (M)
by Frensayce
oOo
Love Enough Series
by Frensayce
Completed. Ok, one of my favorites. It's basically Married Faberry going through a rough patch. Their relationship with their kids is so pure and adorable, especially Ava. It's also very realistic, in my opinion, and it deals with serious subjects. Overall, 5/5.
oOo
Make Like Strangers (M)
by Kendarrr
oOo
The Amazing Rachel Berry
by thatoneloserkid
oOo
The Green Eyed Monster
by college.kid
Completed. Not a Faberry Fanfic but I can't help but just recommend this. It's a Quinntana Fanfic. It's about little Jealous Quinn and Santana being cute little childhood sweethearts. The banter between both their mothers in this fic is reminiscent of Quinn and Santana's real life banter, and are literally fucking hilarious. I genuinely recommend you read this.
They have another fic called "Little Monsters" and is also about Quinntana. And It's absolutely fantastic. Check it out
oOo
Mea Culpa (M)
by Frensayce
May be blasphemous...
oOo
The Perfect NoneCliché
by thatoneloserkid
oOo
Four
by animatedbrowneyes
'I am Number Four' plot, but Faberry.
oOo
Just Off The Key Of Reason
by Elly-Bells
Completed. Now this. This is literally god-sent. Probably one of the most sweetest, hilarious and just overall amazing fanfic I've read. So It's about Rachel and Quinn, who has Aspergers. They have this adorable relationship together and it's just too perfect. Also, Rachel's inner monologue has to be my favorite part of the fanfic. It is absolutely hilarious.
oOo
Let's Get These Teen Hearts Beating
by Angel's Fallen Knight
oOo
Gym Class Hero (Mostly smut but there's a plot)
by Thr0waway
oOo
Double Trouble (smut with plot)
by Thatoneloserkid
Twins Quinn and Charlie fight over Rachel Berry. Crazy, right?
Bedtime Stories
by roxystyle011
Completed. Another one. I can't really explain or else i'll just spoil it but It's almost enemies to friends to lovers kind of fic.
oOo
Nasim Joon
by BrownEyedDreamWeaver
Completed. Okay, Another one lmao. This is College Faberry in OSU. Strict Christian Quinn gets Proud Lesbian Rachel as a roommate basically. Deals with gay panic and shit.
oOo
Bro Time
by animatedbrowneyes
oOo
Crazy On You
by Rozystyle011
Completed. A favorite of mine. Famous Rachel almost gets arrested but thankfully doesn't have to go to the jail, if she goes to the therapy, and her therapist is none other than Quinn. This is universe where Rachel and Quinn don't really end on good terms in Lima and just move on to college so it's almost like enemies to lovers. 12/10
oOo
Crazy On You, Too
by roxystyle011
Ongoing, ugh. Sequel to 'Crazy On You'
I think I'm going to add more but just let me know!